CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17800

Gene name DNA-binding protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF S.X. H.G.
0.91 95.6 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.67 81.6 At1g47480 841155 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV S.X. H.G.
0.63 78.1 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.60 75.7 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.50 65.3 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.6 99.8 GSM291098 root - 08% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
41.6 99.8 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
38.9 99.8 GSM231203 chl1 at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
37.8 99.8 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
36.5 99.7 GSM291114 root - 21% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
36.3 99.7 GSM131438 AtGen_6-8622_Woundingstress-Roots-24.0h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
35.4 99.7 GSM260882 Yap_A1-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
29.6 99.7 GSM290828 root - 04% oxygen - 48h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
29.3 99.7 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
29.2 99.7 GSM131437 AtGen_6-8621_Woundingstress-Roots-24.0h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 1e-41 171 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA C.G. S.X.
0.18 3e-11 69 At4g22810 828380 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFV C.G. S.X.
0.14 3e-11 69 At1g20900 838683 ESC (ESCAROLA) Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light. C.G. S.X.
0.09 2e-9 63 At3g60870 825258 DNA-binding protein-related F:unknown;P:unknown;C:unknown;PB C.G. S.X.
0.09 2e-9 63 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO C.G. S.X.
0.05 3e-8 59 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA C.G. S.X.
0.05 5e-7 56 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF C.G. S.X.
0.08 5e-4 46 At4g12050 826813 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.08 2e-3 44 At1g76500 843983 SOB3 (SUPPRESSOR OF PHYB-4#3) Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 7e-13 75 Glycine max GmaAffx.38693.1.S1_at AW349908 - - 1e-8 At4g17800 DNA-binding protein-related C.G. S.X.
0.02 2e-1 36 Hordeum vulgare Contig3657_s_at Contig3657 - - 5e+0 At5g55570 unknown protein C.G. S.X.
0.06 6e-5 50 Oryza sativa OsAffx.26545.1.S1_s_at - - - 0 C.G. S.X.
0.17 2e-10 67 Populus trichocarpa PtpAffx.215112.1.S1_at pmrna29099 hypothetical protein - 2e-10 At4g17800 DNA-binding protein-related C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.105959.1.S1_at CA727348 - - 7e-2 At4g17800 DNA-binding protein-related C.G. S.X.
0.03 5e-4 44 Vitis vinifera 1621103_at CB003423 - - 2e-12 At3g04570 DNA-binding protein-related C.G. S.X.
0.03 7e-1 34 Zea mays ZmAffx.1523.1.S1_at 40794996-120 - - 4e-9 Atmg01080 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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