CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17585

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g17585 827476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At5g40130 3771383 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.83 91.4 At2g33010 817863 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.80 89.8 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV S.X. H.G.
0.80 89.8 At4g19570 827699 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.79 89.1 At2g32050 817765 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.78 88.6 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At5g37640 833742 UBQ9 polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. S.X. H.G.
0.77 88.0 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
471.2 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
377.7 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
360.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
343.5 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
326.7 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
301.0 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
285.5 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
283.6 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
232.0 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
223.5 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 9e-112 402 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF C.G. S.X.
0.11 2e-20 99 At5g46610 834704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO C.G. S.X.
0.05 3e-10 65 At5g46600 834703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF C.G. S.X.
0.03 2e-1 36 At5g17810 831649 WOX12 (WUSCHEL related homeobox 12) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. C.G. S.X.
0.03 2e-1 36 At3g10260 820188 reticulon family protein F:unknown;P:unknown;C:mitochondrion, endoplasmic reticulum;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Glycine max GmaAffx.89802.1.S1_s_at CK606621 - - 1e-16 At5g06600 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) C.G. S.X.
0.05 4e-1 34 Hordeum vulgare HD07M18r_at HD07M18r - - 7e-1 At3g29370 unknown protein C.G. S.X.
0.05 4e-1 36 Oryza sativa OsAffx.14358.1.S1_at - - - 0 C.G. S.X.
0.05 3e-1 36 Populus trichocarpa PtpAffx.220363.1.S1_x_at pmrna36741 hypothetical protein - 9e-2 At4g17585 unknown protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.53434.1.S1_at CA692360 - - 9e-1 At3g01327 - C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1621513_at CB001476 - - 8e-39 At4g36390 radical SAM domain-containing protein / TRAM domain-containing protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.1090.4.A1_at BQ547886 - - 2e+0 At4g17585 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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