Gene omics information

Query gene ID At4g17470
Gene name palmitoyl protein thioesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g17470827458palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.4355.3At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.S.X.H.G.
0.4355.3At4g13410826972ATCSLA15encodes a gene similar to cellulose synthaseS.X.H.G.
0.4253.9At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPS.X.H.G.
0.4050.8At4g23600828460CORI3 (CORONATINE INDUCED 1)Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.S.X.H.G.
0.3643.6At1g14230837984nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:unknown;C:unknown;MFPOBS.X.H.G.
0.3338.1At1g19670838554ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.S.X.H.G.
0.082.3At3g48350823993cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFS.X.H.G.
0.000.0At2g38750818457ANNAT4 (ANNEXIN ARABIDOPSIS 4)Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.S.X.H.G.
0.000.0At3g16470820895JR1JA-responsive geneS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
236.6100.0GSM128723Pieterse_1-9_Prapae-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
182.7100.0GSM128724Pieterse_1-10_Prapae-24h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
123.599.9GSM128655Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
115.599.9GSM1330542796GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
106.899.9GSM128720Pieterse_1-6_avrPstDC3000-24h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
101.699.9GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
94.399.9GSM152137Col-0 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
90.299.9GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
74.699.9GSM142883CW001_ATH1_A1.2-WestC-wsbGSE6178Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants
72.199.9GSM1330412525GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.736e-65248At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.413e-30133At4g17483827461palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.194e-2099At5g47340834781palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.112e-1583At5g47330834780palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFOC.G.S.X.
0.118e-961At3g60340825205palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:vacuole;MPFOC.G.S.X.
0.065e-446At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.011e-138At5g47480834798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAVC.G.S.X.
0.025e-136At5g67130836848phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:anchored to plasma membrane, plasma membrane;FPOBMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-240Glycine maxGmaAffx.63922.1.S1_atBI424114--1e-2At4g17470palmitoyl protein thioesterase family proteinC.G.S.X.
0.031e-240Hordeum vulgareContig5918_atContig5918--9e-6At3g60340palmitoyl protein thioesterase family proteinC.G.S.X.
0.051e-346Oryza sativaOs03g0101100AK120839.1-Palmitoyl protein thioesterase family protein6e-1At5g47330palmitoyl protein thioesterase family proteinC.G.S.X.
0.101e-552Populus trichocarpaPtpAffx.145921.1.S1_atCV282466hypothetical protein-3e-15At3g60340palmitoyl protein thioesterase family proteinC.G.S.X.
0.075e-446Triticum aestivumTa.26795.1.A1_atCD491205--3e-4At4g17470palmitoyl protein thioesterase family proteinC.G.S.X.
0.121e-1789Vitis vinifera1620056_s_atCB008823hypothetical protein LOC100249424-2e-15At3g60340palmitoyl protein thioesterase family proteinC.G.S.X.
0.065e-238Zea maysZm.18316.1.S1_atCO521275hypothetical protein LOC100216902-6e-1At5g47330palmitoyl protein thioesterase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00062Link to KEGG PATHWAYFatty acid elongation in mitochondria
01100Link to KEGG PATHWAYMetabolic pathways
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