CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17310

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g17310 827444 unknown protein F:unknown;P:unknown;C:chloroplast;P S.X. H.G.
0.52 67.4 At5g19630 832083 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF S.X. H.G.
0.51 66.3 At2g25310 817069 carbohydrate binding F:carbohydrate binding;P:biological_process unknown;C:endomembrane system;MFPOB S.X. H.G.
0.49 63.5 At5g18250 831943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.49 63.5 At3g15040 820733 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB S.X. H.G.
0.48 62.5 At5g08320 830728 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP S.X. H.G.
0.46 59.8 At3g29350 822593 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). S.X. H.G.
0.44 57.2 At5g20120 832134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP S.X. H.G.
0.42 53.9 At4g02080 827368 ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
0.42 53.9 At1g01230 839331 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.7 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.5 99.7 GSM176880 AWP_Control_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
23.5 99.6 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.9 99.6 GSM131105 Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
19.4 99.6 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.9 99.5 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.8 99.2 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
8.6 99.0 E-ATMX-33-raw-cel-1562596241
7.9 98.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 5e-35 147 At5g47455 834795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 6e-1 34 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-10 65 Glycine max GmaAffx.72561.2.S1_at BG155858 - - 2e-10 At4g17310 unknown protein C.G. S.X.
0.11 2e-8 57 Hordeum vulgare Contig22648_at Contig22648 - - 6e-8 At4g17310 unknown protein C.G. S.X.
0.10 5e-12 71 Oryza sativa OsAffx.24715.1.S1_at - - - 0 C.G. S.X.
0.20 2e-10 65 Populus trichocarpa PtpAffx.25638.2.S1_at CK102898 hypothetical protein - 3e-10 At4g17310 unknown protein C.G. S.X.
0.11 7e-10 63 Triticum aestivum TaAffx.57652.1.S1_at CA626274 - - 1e-9 At4g17310 unknown protein C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1621847_at CF202726.1 hypothetical protein LOC100267426 - 4e+0 At4g17310 unknown protein C.G. S.X.
0.11 3e-10 63 Zea mays Zm.17347.1.S1_at CK370714 hypothetical protein LOC100217009 - 1e-9 At4g17310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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