CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g17215

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.83 91.4 At4g17215 827433 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.93 96.4 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.93 96.4 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At4g02090 827380 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g57620 835866 MYB36 (myb domain protein 36) Encodes a putative transcription factor (MYB36). S.X. H.G.
0.89 94.6 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
596.3 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
388.8 100.0 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
221.6 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
160.3 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
119.3 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
115.0 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
95.2 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
94.1 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
90.4 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
83.4 99.9 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 2e-5 50 At5g47635 834814 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.11 1e-2 40 At2g40113 818601 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 9e-1 34 At5g27600 832820 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5. C.G. S.X.
0.02 9e-1 34 At5g44340 834459 TUB4 beta tubulin gene C.G. S.X.
0.01 9e-1 34 At4g36150 829772 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAV C.G. S.X.
0.02 3e+0 32 At5g26250 832694 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA C.G. S.X.
0.02 3e+0 32 At5g19550 832075 ASP2 (ASPARTATE AMINOTRANSFERASE 2) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. C.G. S.X.
0.01 3e+0 32 At5g34930 833436 arogenate dehydrogenase F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:unknown;BOPAFM C.G. S.X.
0.03 3e+0 32 At3g59260 825095 pirin, putative F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Glycine max GmaAffx.6166.1.S1_at BU927326 - - 1e-27 At3g20350 unknown protein C.G. S.X.
0.03 7e+0 30 Hordeum vulgare Contig19898_at Contig19898 - - 1e+1 At5g10070 RNase L inhibitor protein-related C.G. S.X.
0.04 7e+0 32 Oryza sativa Os02g0449875 9630.m02357 - - 4e+0 At4g17215 unknown protein C.G. S.X.
0.02 1e+0 34 Populus trichocarpa PtpAffx.25513.1.A1_at DN484974 magnesium transporter - 3e-5 At2g03620 magnesium transporter CorA-like family protein (MRS2-5) C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.80376.1.S1_at CA697558 - - 5e-1 At2g03580 F-box family protein-related C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618691_at CF372335 - - 4e-3 At3g60800 zinc finger (DHHC type) family protein C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.576.1.A1_a_at AI714783 - - 3e+0 At4g17215 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage