Gene omics information

Query gene ID At4g17090
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).S.X.H.G.
0.4152.4At4g18810827615binding / catalytic/ transcription repressorF:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAMS.X.H.G.
0.4050.8At4g39800830139MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.S.X.H.G.
0.3643.6At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVS.X.H.G.
0.3439.8At3g25690822157CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)actin binding protein required for normal chloroplast positioningS.X.H.G.
0.3133.8At1g62750842573SCO1 (SNOWY COTYLEDON 1)Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants.S.X.H.G.
0.3133.8At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1S.X.H.G.
0.3133.8At1g07010837211calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAVS.X.H.G.
0.3133.8At5g10470830911kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAVS.X.H.G.
0.3133.8At5g42310834236pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
87.899.9GSM128794Zarka_1-6_MT-WT24HB_Rep2_ATH1GSE5534Response to cold, plate grown plants
53.499.8GSM131279AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
49.399.8GSM131280AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
48.099.8GSM128802Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1GSE5535Response to cold, soil grown plants
46.499.8GSM131275AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
43.599.8GSM131276AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
42.699.8GSM128801Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1GSE5535Response to cold, soil grown plants
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-446At2g45880819196BAM7 (BETA-AMYLASE 7)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PBOFC.G.S.X.
0.012e-138At5g18670831985BMY3putative beta-amylase BMY3 (BMY3)C.G.S.X.
0.012e-138At3g13450820547DIN4 (DARK INDUCIBLE 4)branched chain alpha-keto acid dehydrogenase E1 betaC.G.S.X.
0.062e-138At3g23920821975BAM1 (BETA-AMYLASE 1)Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.C.G.S.X.
0.012e-138At2g36490818224DML1 (DEMETER-LIKE 1)A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts.C.G.S.X.
0.012e-138At2g41290818728strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFAC.G.S.X.
0.018e-136At4g23950828495-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBPC.G.S.X.
0.018e-136At4g32420829377peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;MOBFPVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.372e-20101Glycine maxGma.16670.1.S1_atAW350266beta-amylase-2e-20At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.101e-757Hordeum vulgareContig8246_atContig8246--2e-7At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.085e-1067Oryza sativaOs03g0141200AK068968.1-Glycoside hydrolase, family 14B, plant protein3e-10At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.492e-73278Populus trichocarpaPtp.5279.1.S1_atBU808930hypothetical protein-9e-74At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.092e-757Triticum aestivumTa.4494.1.S1_x_atBE516748--2e-7At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.442e-51202Vitis vinifera1616107_s_atCB340793hypothetical protein LOC100247246-5e-51At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
0.069e-238Zea maysZm.3883.1.S1_atAY105500.1beta-amylase-2e-1At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0000024The chemical reactions and pathways resulting in the formation of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose).
XGO:0005983The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00005Link to KaPPA-View 4Starch and maltose degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00500Link to KEGG PATHWAYStarch and sucrose metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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