Gene omics information

Query gene ID At4g17030
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At4g17030827411ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.6781.6At2g41190818718amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAVS.X.H.G.
0.4659.8At3g13672820573seven in absentia (SINA) family proteinF:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPOS.X.H.G.
0.4457.2At2g46680819280ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.S.X.H.G.
0.3338.1At5g57050835809ABI2 (ABA INSENSITIVE 2)Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
217.0100.0GSM131326AtGen_6-3522_Saltstress-Roots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
216.0100.0GSM131305AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
126.799.9GSM131302AtGen_6-2522_Osmoticstress-Roots-12.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
120.199.9GSM131306AtGen_6-2622_Osmoticstress-Roots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
108.099.9GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
106.799.9GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
94.999.9GSM131330AtGen_6-3622_Saltstress-Roots-24.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
94.599.9GSM131301AtGen_6-2521_Osmoticstress-Roots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
91.199.9GSM260881Yap_A2-AMFGSE10323Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
84.099.9GSM268249dor-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-240At4g09420826524disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOC.G.S.X.
0.029e-238At5g09230830782SRT2 (SIRTUIN 2)Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).C.G.S.X.
0.024e-136At4g26390828745pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAC.G.S.X.
0.012e+034At5g04930830375ALA1 (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.C.G.S.X.
0.012e+034At5g06110830498DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedF:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVAC.G.S.X.
0.032e+034At4g29820829104CFIM-25Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-446Glycine maxGma.3950.2.S1_atBQ081434--8e-1At5g07550GRP19 (GLYCINE-RICH PROTEIN 19)C.G.S.X.
0.031e+130Hordeum vulgareS0001100164G09F1_atS0001100164G09F1--7e-1At3g47100unknown proteinC.G.S.X.
0.048e-446Oryza sativaOsAffx.22303.1.S1_at---0C.G.S.X.
0.078e-342Populus trichocarpaPtp.3846.1.S1_s_atCV273433--9e-3At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.56132.1.S1_atBG908159--8e-1At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)C.G.S.X.
0.062e+032Vitis vinifera1620438_atCD713864hypothetical protein LOC100243043-1e+0At1g49800unknown proteinC.G.S.X.
0.033e+032Zea maysZm.3876.1.S1_atAY111960.1hypothetical protein LOC100278092-5e+0At4g17030ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0009826The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
CGO:0009828The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.
LGO:0019953The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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