CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16990

Gene name RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At4g16990 827407 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMB S.X. H.G.
0.35 41.6 At1g63880 842692 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. S.X. H.G.
0.25 22.6 At3g47250 823878 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.20 14.4 At1g23130 838921 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.18 11.4 At1g58848 842226 ATP binding / protein binding F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA S.X. H.G.
0.15 7.8 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.11 4.1 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB S.X. H.G.
0.08 2.3 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.4 99.7 E-MEXP-98-raw-cel-320189079
35.0 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.8 99.7 E-MEXP-98-raw-cel-320188804
27.5 99.7 E-MEXP-98-raw-cel-320188859
26.8 99.7 E-MEXP-98-raw-cel-320189024
23.9 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.8 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.3 99.6 GSM131168 AtGen_C-18_3-Pi-24_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
18.8 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.4 99.5 GSM128690 Helenius_1-3_ERD15-oex-non-treated_Rep1_ATH1 GSE5521 Comparative ABA-treatment of Col-O vector control and transgenic plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 6e-39 163 At4g19500 827691 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAV C.G. S.X.
0.20 2e-32 141 At5g51630 835237 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.13 3e-25 117 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. C.G. S.X.
0.13 3e-25 117 At4g16950 827403 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-5 52 Glycine max GmaAffx.83012.1.S1_at BQ080089 - - 3e-6 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.02 5e-1 36 Hordeum vulgare HVSMEf0001O09r2_s_at HVSMEf0001O09r2 - - 5e-1 At4g15755 C2 domain-containing protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.03 6e-3 44 Populus trichocarpa PtpAffx.225834.1.S1_s_at pmrna45453 tir-nbs-lrr resistance protein - 7e-4 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.12336.1.A1_at BQ172120 - - 8e-1 At3g22430 unknown protein C.G. S.X.
0.04 5e-6 52 Vitis vinifera 1612991_at CF568928 - - 4e-6 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.15930.1.A1_at CO520051 hypothetical protein LOC100273361 - 6e-7 At5g08400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009817 A response of an organism to a fungus that prevents the occurrence or spread of disease.
X GO:0009861 The jasmonic acid and ethylene (ethene) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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