CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16930

Gene name disease resistance protein (TIR-NBS-LRR class), putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.96 97.3 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.95 97.0 At2g22960 816827 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMOF S.X. H.G.
0.94 96.7 At5g35270 833481 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.93 96.4 At5g39620 833958 AtRABG1 (Arabidopsis Rab GTPase homolog G1) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA S.X. H.G.
0.93 96.4 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
383.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
374.6 100.0 E-MEXP-509-raw-cel-829148525
280.0 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
225.6 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
224.8 100.0 E-MEXP-509-raw-cel-829148561
219.4 100.0 E-MEXP-509-raw-cel-829148597
205.1 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
196.1 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
183.1 100.0 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
175.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-36 153 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
0.09 3e-34 145 At4g16950 827403 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. C.G. S.X.
0.05 2e-29 129 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. C.G. S.X.
0.07 5e-27 121 At4g16960 827404 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFVA C.G. S.X.
0.07 5e-27 121 At4g16940 827402 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:mitochondrion;PMOBFAV C.G. S.X.
0.11 5e-24 111 At4g16890 827397 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. C.G. S.X.
0.18 1e-18 93 At4g16900 827399 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFVA C.G. S.X.
0.09 4e-15 81 At4g19500 827691 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max Gma.14823.1.S1_at AW831266 - - 5e+0 At4g35770 SEN1 (SENESCENCE 1) C.G. S.X.
0.05 7e+0 30 Hordeum vulgare HVSMEa0003M14r2_x_at HVSMEa0003M14r2 - - 4e+0 At3g15909 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa OsAffx.27508.7.S1_s_at - - - 0 C.G. S.X.
0.07 3e-1 36 Populus trichocarpa PtpAffx.225144.1.S1_s_at pmrna44277 hypothetical protein - 2e-1 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.55526.1.S1_at CA664862 - - 2e+0 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1608937_at CF515338 - - 2e-1 At3g53350 myosin heavy chain-related C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17511.1.A1_at CK368673 hypothetical protein LOC100194337 - 1e+0 At3g22600 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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