CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16890

Gene name SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At4g16890 827397 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. S.X. H.G.
0.82 90.9 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV S.X. H.G.
0.71 84.2 At3g46530 823806 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. S.X. H.G.
0.70 83.5 At1g58848 842226 ATP binding / protein binding F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PBMOFA S.X. H.G.
0.56 73.0 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA S.X. H.G.
0.55 70.6 At1g69550 843291 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF S.X. H.G.
0.42 53.9 At4g16950 827403 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. S.X. H.G.
0.40 50.8 At1g58807 842225 disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA S.X. H.G.
0.39 48.4 At2g14080 815893 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.0 99.8 E-ATMX-32-raw-cel-1562974681
39.1 99.8 E-ATMX-32-raw-cel-1562974504
35.8 99.7 GSM322556 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
33.6 99.7 E-ATMX-32-raw-cel-1562974595
32.4 99.7 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
32.3 99.7 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
32.1 99.7 E-MEXP-1454-raw-cel-1585857961
31.6 99.7 GSM322554 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
31.6 99.7 GSM133091 JD AT+EO COL WT EXP2 05D INFECTED GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
27.8 99.7 E-ATMX-32-raw-cel-1562974462
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 2230 At4g16950 827403 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. C.G. S.X.
0.74 0 1239 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA C.G. S.X.
0.55 0 1138 At4g16960 827404 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFVA C.G. S.X.
0.52 0 1138 At4g16940 827402 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:mitochondrion;PMOBFAV C.G. S.X.
0.62 0 1106 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. C.G. S.X.
0.57 0 938 At4g16900 827399 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFVA C.G. S.X.
0.19 1e-44 182 At4g19500 827691 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 38 Glycine max GmaAffx.61052.1.S1_at BU965381 - - 2e-1 At4g04614 unknown protein C.G. S.X.
0.01 4e+0 34 Hordeum vulgare Contig24657_at Contig24657 - - 2e-2 At5g18940 Mo25 family protein C.G. S.X.
0.01 1e+0 38 Oryza sativa OsAffx.12074.1.S1_at - - - 0 C.G. S.X.
0.01 3e-3 46 Populus trichocarpa PtpAffx.134322.1.A1_at CV239458 - - 6e-3 At1g72890 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.01 5e-1 38 Triticum aestivum Ta.5470.3.S1_a_at CA640397 - - 4e-3 At3g50210 2-oxoacid-dependent oxidase, putative C.G. S.X.
0.01 6e-1 36 Vitis vinifera 1612835_at AY427164.1 - - 6e-2 At4g16900 ATP binding / protein binding / transmembrane receptor C.G. S.X.
0.01 8e-1 36 Zea mays Zm.7128.1.A1_a_at BM333224 hypothetical protein LOC100276381 - 2e+0 At5g25290 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0009862 The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
N GO:0009816 A response of an organism to a bacterium that prevents the occurrence or spread of disease.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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