CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16515

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.57 73.8 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 S.X. H.G.
0.43 55.3 At3g03830 821123 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO S.X. H.G.
0.23 19.3 At1g29500 839827 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
115.5 99.9 E-MEXP-715-raw-cel-1121836113
110.5 99.9 GSM292080 pif1-2, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
99.9 99.9 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
99.0 99.9 E-MEXP-715-raw-cel-1121836221
96.8 99.9 E-MEXP-715-raw-cel-1121836247
96.6 99.9 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
88.6 99.9 GSM292078 Wt, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
72.6 99.9 E-MEXP-715-raw-cel-1121836334
71.7 99.9 E-MEXP-715-raw-cel-1121836005
69.9 99.9 E-MEXP-715-raw-cel-1121835979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-2 38 At5g49340 834994 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.03 1e-1 36 At2g35260 818093 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 1e-1 36 At2g21520 816691 transporter F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.01 5e-1 34 At3g01160 820504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVA C.G. S.X.
0.02 5e-1 34 At2g31770 817734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV C.G. S.X.
0.01 5e-1 34 At1g53350 841771 ATP binding F:ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA C.G. S.X.
0.02 2e+0 32 At5g58660 835980 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Glycine max Gma.12544.1.A1_at CD390812 - - 3e+0 At4g16515 unknown protein C.G. S.X.
0.03 9e-1 32 Hordeum vulgare Contig22343_at Contig22343 - - 2e-6 At2g24240 potassium channel tetramerisation domain-containing protein C.G. S.X.
0.04 2e-1 36 Oryza sativa Os.51324.1.S1_at - - - 0 C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.64920.1.S1_at BI139252 hypothetical protein - 4e-3 At4g18120 AML3 (ARABIDOPSIS MEI2-LIKE 3) C.G. S.X.
0.05 2e+0 32 Triticum aestivum Ta.7080.1.S1_at BJ314952 - - 1e+0 At4g33450 MYB69 (MYB DOMAIN PROTEIN 69) C.G. S.X.
0.04 6e-1 32 Vitis vinifera 1614443_at CF512104 - - 2e-2 At1g21390 emb2170 (embryo defective 2170) C.G. S.X.
0.04 3e+0 30 Zea mays ZmAffx.304.1.A1_at AI670437 - - 1e-2 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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