CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16370

Gene name ATOPT3 (OLIGOPEPTIDE TRANSPORTER)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. S.X. H.G.
0.89 94.6 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB S.X. H.G.
0.67 81.6 At3g18290 821357 EMB2454 (embryo defective 2454) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV S.X. H.G.
0.01 0.2 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP S.X. H.G.
0.01 0.2 At5g67330 836868 ATNRAMP4 Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.9 99.8 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
55.8 99.8 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
50.9 99.8 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
42.8 99.8 GSM125257 Seedling_OETOP6B_rep2 GSE5465 Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
41.4 99.8 E-ATMX-30-raw-cel-1513696731
38.2 99.8 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
33.0 99.7 GSM133719 Deeken_A-1-Deeke-Tum_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
32.7 99.7 GSM125256 Seedling_OETOP6B_rep1 GSE5465 Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
32.1 99.7 GSM125254 Seedling_OEA3L5_rep1 GSE5465 Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
29.4 99.7 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 4e-9 63 At5g53510 835433 ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9) oligopeptide transporter C.G. S.X.
0.03 3e-7 57 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter C.G. S.X.
0.07 2e-5 52 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter C.G. S.X.
0.05 4e-3 44 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.04 1e-2 42 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter C.G. S.X.
0.01 6e-2 40 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. C.G. S.X.
0.04 2e-1 38 At5g55930 835691 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.02 2e-1 38 At5g64410 836562 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) oligopeptide transporter C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-26 121 Glycine max GmaAffx.44767.1.S1_at BE346193 - - 5e-27 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.17 1e-35 151 Hordeum vulgare Contig14945_at Contig14945 - - 8e-36 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.33 7e-28 127 Oryza sativa Os.4978.1.S2_at - - - 0 C.G. S.X.
0.24 1e-37 159 Populus trichocarpa Ptp.5199.1.S1_at CV281699 oligopeptide transporter OPT family - 7e-38 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.24 9e-32 139 Triticum aestivum Ta.1984.1.S1_at BG604569 - - 5e-32 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.03 7e-5 48 Vitis vinifera 1618917_at CB970710 - - 1e-4 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.40 6e-25 115 Zea mays Zm.16913.1.S1_at BQ619268 GT1 protein - 2e-24 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006875 Any process involved in the maintenance of an internal equilibrium of metal ions at the level of a cell.
C GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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