CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16260

Gene name catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO S.X. H.G.
0.89 94.6 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA S.X. H.G.
0.80 89.8 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV S.X. H.G.
0.50 65.3 At2g15120 3768033 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.44 57.2 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.2 99.8 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
58.7 99.8 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
58.5 99.8 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
58.3 99.8 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
50.9 99.8 E-ATMX-31-raw-cel-1516948001
49.2 99.8 E-ATMX-31-raw-cel-1516948018
48.0 99.8 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
44.3 99.8 GSM39192 RRE1_C2 GSE2169 rre1 and rre2 mutants
43.9 99.8 GSM39201 Col_C3 GSE2169 rre1 and rre2 mutants
42.7 99.8 GSM133025 BC181-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd C.G. S.X.
0.02 1e-1 38 At4g03205 828029 coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative F:coproporphyrinogen oxidase activity;P:porphyrin biosynthetic process;C:chloroplast;OBFMP C.G. S.X.
0.01 1e-1 38 At3g54610 824626 GCN5 Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14. C.G. S.X.
0.02 5e-1 36 At5g67060 836841 HEC1 (HECATE 1) F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA C.G. S.X.
0.02 5e-1 36 At4g26830 828790 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO C.G. S.X.
0.01 2e+0 34 At5g56930 835795 emb1789 (embryo defective 1789) F:zinc ion binding, nucleic acid binding;P:embryonic development ending in seed dormancy;C:unknown;OMFPBV C.G. S.X.
0.01 2e+0 34 At4g27510 828860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max Gma.2904.3.S1_at BM307932 - - 2e-1 At3g61947 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig21351_at Contig21351 - - 7e-1 At3g21890 zinc finger (B-box type) family protein C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.10702.1.S1_at - - - 0 C.G. S.X.
0.06 1e-5 52 Populus trichocarpa PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.108743.2.S1_at CA656427 - - 4e+0 At4g30067 LCR63 (Low-molecular-weight cysteine-rich 63) C.G. S.X.
0.04 6e-4 44 Vitis vinifera 1615595_at AF239617.2 class I beta-1,3-glucanase - 3e-3 At4g16260 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.726.1.A1_at AI739956 - - 3e+0 At2g32360 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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