Gene omics information

Query gene ID At4g16143
Gene name IMPA-2 (IMPORTIN ALPHA ISOFORM 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g16143827302IMPA-2 (IMPORTIN ALPHA ISOFORM 2)Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.S.X.H.G.
0.5065.3At5g19820832102emb2734 (embryo defective 2734)F:lyase activity, binding;P:embryonic development ending in seed dormancy;C:cell wall, phycobilisome;MFOPS.X.H.G.
0.3643.6At1g80410844381EMB2753 (EMBRYO DEFECTIVE 2753)F:binding;P:embryonic development ending in seed dormancy;C:membrane;OBMAFPVS.X.H.G.
0.3643.6At3g59020825071binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;OMFBPVAS.X.H.G.
0.103.4At4g32640829399protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.599.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
16.299.5GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
13.999.4GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
10.599.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.899.1GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.699.1GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.699.1GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.599.1GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.899.0GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.699.0GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.622e-53210At3g06720819857IMPA-1 (IMPORTIN ALPHA ISOFORM 1)Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
0.173e-1893At5g49310834991IMPA-5 (IMPORTIN ALPHA ISOFORM 5)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
0.262e-1067At4g02150827472MOS6 (MODIFIER OF SNC1, 6)Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
0.251e-861At1g09270837448IMPA-4 (IMPORTIN ALPHA ISOFORM 4)Protein interacts with Agrobacterium proteins VirD2 and VirE2.C.G.S.X.
0.105e-859At3g05720819741IMPA-7 (IMPORTIN ALPHA ISOFORM 7)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.534e-49196Glycine maxGma.7528.2.S1_atBM891312--3e-49At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)C.G.S.X.
0.352e-27123Hordeum vulgareContig4129_atContig4129--9e-26At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.301e-31139Oryza sativaOs01g0253300AB004660.1-Importin alpha 26e-24At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.517e-54212Populus trichocarpaPtp.6439.1.S1_s_atBU874074hypothetical protein-4e-54At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)C.G.S.X.
0.401e-27125Triticum aestivumTa.28018.1.S1_atCK159354--2e-27At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)C.G.S.X.
0.169e-1683Vitis vinifera1607723_atCF568821--5e-18At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.253e-1685Zea maysZm.4271.2.S1_a_atAY103821.1hypothetical protein LOC100193437-2e-20At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006606The directed movement of a protein from the cytoplasm to the nucleus.
CGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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