CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16143

Gene name IMPA-2 (IMPORTIN ALPHA ISOFORM 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g16143 827302 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.50 65.3 At5g19820 832102 emb2734 (embryo defective 2734) F:lyase activity, binding;P:embryonic development ending in seed dormancy;C:cell wall, phycobilisome;MFOP S.X. H.G.
0.36 43.6 At1g80410 844381 EMB2753 (EMBRYO DEFECTIVE 2753) F:binding;P:embryonic development ending in seed dormancy;C:membrane;OBMAFPV S.X. H.G.
0.36 43.6 At3g59020 825071 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;OMFBPVA S.X. H.G.
0.10 3.4 At4g32640 829399 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.5 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.2 99.5 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
13.9 99.4 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.5 99.2 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.8 99.1 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.6 99.1 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.6 99.1 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
9.5 99.1 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.8 99.0 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.6 99.0 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 2e-53 210 At3g06720 819857 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.17 3e-18 93 At5g49310 834991 IMPA-5 (IMPORTIN ALPHA ISOFORM 5) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.26 2e-10 67 At4g02150 827472 MOS6 (MODIFIER OF SNC1, 6) Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.25 1e-8 61 At1g09270 837448 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) Protein interacts with Agrobacterium proteins VirD2 and VirE2. C.G. S.X.
0.10 5e-8 59 At3g05720 819741 IMPA-7 (IMPORTIN ALPHA ISOFORM 7) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 4e-49 196 Glycine max Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.35 2e-27 123 Hordeum vulgare Contig4129_at Contig4129 - - 9e-26 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.30 1e-31 139 Oryza sativa Os01g0253300 AB004660.1 - Importin alpha 2 6e-24 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.51 7e-54 212 Populus trichocarpa Ptp.6439.1.S1_s_at BU874074 hypothetical protein - 4e-54 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.40 1e-27 125 Triticum aestivum Ta.28018.1.S1_at CK159354 - - 2e-27 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.16 9e-16 83 Vitis vinifera 1607723_at CF568821 - - 5e-18 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.25 3e-16 85 Zea mays Zm.4271.2.S1_a_at AY103821.1 hypothetical protein LOC100193437 - 2e-20 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006606 The directed movement of a protein from the cytoplasm to the nucleus.
C GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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