CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g16050

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.88 94.0 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.82 90.9 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At1g52430 841674 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF S.X. H.G.
0.79 89.1 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.77 88.0 At3g28280 822454 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. S.X. H.G.
0.76 87.4 At1g46912 841119 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.76 87.4 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
366.5 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
354.1 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
322.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
320.6 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
318.1 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
312.2 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
296.9 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
293.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
287.5 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
279.7 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 3e-25 117 At1g51538 5007789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.32 2e-20 101 At1g50830 841505 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAB C.G. S.X.
0.23 2e-11 71 At5g18510 831969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.07 7e-8 59 At1g50790 841501 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFB C.G. S.X.
0.07 7e-8 59 At1g50770 841499 unknown protein F:unknown;P:unknown;C:chloroplast;PMOBFV C.G. S.X.
0.01 7e-5 50 At1g32120 840104 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOFPBVA C.G. S.X.
0.01 4e-3 44 At5g22640 832327 emb1211 (embryo defective 1211) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA C.G. S.X.
0.01 2e-2 42 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA C.G. S.X.
0.08 2e-2 42 At1g50820 841504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Glycine max GmaAffx.57516.1.S1_at AW423415 - - 8e-1 At2g15610 unknown protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare rbah48o18_s_at rbah48o18 - - 1e+0 At1g54760 AGL85 (AGAMOUS-LIKE 85) C.G. S.X.
0.02 5e-1 38 Oryza sativa Os01g0243400 AK070651.1 - Hypothetical protein 1e+0 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) C.G. S.X.
0.04 2e-2 42 Populus trichocarpa PtpAffx.211206.1.S1_at pmrna22020 hypothetical protein - 1e-6 At5g18510 unknown protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.103305.2.S1_at CA625275 - - 2e-2 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1617352_at CD721675 hypothetical protein LOC100257795 - 4e+0 At5g16330 NC domain-containing protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.9120.1.A1_at BM348766 - - 9e-2 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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