Gene omics information

Query gene ID At4g16050
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g16050827290unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAS.X.H.G.
0.8894.0At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.8290.9At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8190.4At1g52430841674ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMFS.X.H.G.
0.7989.1At5g14560831307unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7888.6At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFS.X.H.G.
0.7788.0At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7788.0At2g01500814678PFS2 (PRETTY FEW SEEDS 2)PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.S.X.H.G.
0.7687.4At1g46912841119F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7687.4At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
366.5100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
354.1100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
322.1100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
320.6100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
318.1100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
312.2100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
296.9100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
293.5100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
287.5100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
279.7100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.333e-25117At1g515385007789unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.322e-20101At1g50830841505unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFABC.G.S.X.
0.232e-1171At5g18510831969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.077e-859At1g50790841501unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBC.G.S.X.
0.077e-859At1g50770841499unknown proteinF:unknown;P:unknown;C:chloroplast;PMOBFVC.G.S.X.
0.017e-550At1g32120840104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;MOFPBVAC.G.S.X.
0.014e-344At5g22640832327emb1211 (embryo defective 1211)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVAC.G.S.X.
0.012e-242At5g15140831366aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAC.G.S.X.
0.082e-242At1g50820841504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-242Glycine maxGmaAffx.57516.1.S1_atAW423415--8e-1At2g15610unknown proteinC.G.S.X.
0.022e+034Hordeum vulgarerbah48o18_s_atrbah48o18--1e+0At1g54760AGL85 (AGAMOUS-LIKE 85)C.G.S.X.
0.025e-138Oryza sativaOs01g0243400AK070651.1-Hypothetical protein1e+0At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)C.G.S.X.
0.042e-242Populus trichocarpaPtpAffx.211206.1.S1_atpmrna22020hypothetical protein-1e-6At5g18510unknown proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.103305.2.S1_atCA625275--2e-2At5g61590AP2 domain-containing transcription factor family proteinC.G.S.X.
0.021e+034Vitis vinifera1617352_atCD721675hypothetical protein LOC100257795-4e+0At5g16330NC domain-containing proteinC.G.S.X.
0.021e-138Zea maysZm.9120.1.A1_atBM348766--9e-2At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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