Gene omics information

Query gene ID At4g15975
Gene name protein binding / zinc ion binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At4g15975827281protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;MPFOVS.X.H.G.
0.9296.0At3g44560823581FAR8 (FATTY ACID REDUCTASE 8)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFPS.X.H.G.
0.9296.0At4g31950829325CYP82C3member of CYP82CS.X.H.G.
0.9195.6At1g10880837631unknown proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.8089.8At3g54520824617unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBS.X.H.G.
0.6781.6At2g20720816600pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.6781.6At3g28610822491ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
846.9100.0GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
629.2100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
527.7100.0GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
394.4100.0GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
67.099.8GSM48122Col_8mer1GSE2538Chitin Oligomer Experiment
62.799.8GSM48123Col_8mer2GSE2538Chitin Oligomer Experiment
57.899.8GSM48127Col_CSC3GSE2538Chitin Oligomer Experiment
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.232e-24113At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.C.G.S.X.
0.046e-961At1g53820841819zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.061e-344At5g58580835972ATL63 (ARABIDOPSIS TÓF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.022e-240At1g10700837613ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPVC.G.S.X.
0.011e+034At4g15320827198ATCSLB06 (CELLULOSE SYNTHASE LIKE B6)encodes a gene similar to cellulose synthaseC.G.S.X.
0.011e+034At3g06830819867pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAMC.G.S.X.
0.021e+034At3g60220825192ATL4Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).C.G.S.X.
0.011e+034At1g34340840335esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMOFPC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGma.12809.2.S1_atBU927314--9e-1At4g15975protein binding / zinc ion bindingC.G.S.X.
0.033e-342Hordeum vulgareHA31F17r_atHA31F17r--4e-3At4g15975protein binding / zinc ion bindingC.G.S.X.
0.021e+132Oryza sativaOs01g0809000AK119363.1-Conserved hypothetical protein4e-1At1g12830unknown proteinC.G.S.X.
0.085e-136Populus trichocarpaPtpAffx.204793.1.S1_x_atpmrna9444hypothetical protein-2e-8At1g72310ATL3C.G.S.X.
0.046e-342Triticum aestivumTaAffx.107021.1.S1_atCA707574--3e-3At4g15975protein binding / zinc ion bindingC.G.S.X.
0.077e-340Vitis vinifera1622773_atCF605812hypothetical protein LOC100253381-2e-2At4g15975protein binding / zinc ion bindingC.G.S.X.
0.022e+032Zea maysZm.17399.1.A1_atCO523217protein binding protein-3e-7At1g63170zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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