CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g15510

Gene name photosystem II reaction center PsbP family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At4g15510 827223 photosystem II reaction center PsbP family protein F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO S.X. H.G.
0.72 84.8 At3g47650 823919 bundle-sheath defective protein 2 family / bsd2 family F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POB S.X. H.G.
0.72 84.8 At2g03420 814871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.72 84.8 At4g11175 826719 translation initiation factor IF-1, chloroplast, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP S.X. H.G.
0.71 84.2 At1g68590 843189 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative F:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBP S.X. H.G.
0.71 84.2 At2g24090 816943 ribosomal protein L35 family protein F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMF S.X. H.G.
0.70 83.5 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV S.X. H.G.
0.70 83.5 At3g15190 820750 chloroplast 30S ribosomal protein S20, putative F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPM S.X. H.G.
0.69 82.9 At5g45930 834633 CHLI2 (MAGNESIUM CHELATASE I2) encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex. S.X. H.G.
0.68 82.2 At5g14660 831318 PDF1B (PEPTIDE DEFORMYLASE 1B) encodes a peptide deformylase-like protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.4 99.7 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
26.7 99.7 E-ATMX-25-raw-cel-1441077398
24.0 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.3 99.6 E-ATMX-25-raw-cel-1441077379
23.2 99.6 E-ATMX-25-raw-cel-1441077420
22.1 99.6 E-ATMX-25-raw-cel-1441077441
20.2 99.6 E-ATMX-26-raw-cel-1441077073
16.6 99.5 E-ATMX-27-raw-cel-1441080604
16.2 99.5 GSM268009 Col-0, Time 0, rep-B GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
15.9 99.5 E-ATMX-26-raw-cel-1441077115
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 9e-27 121 At4g15560 827230 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis C.G. S.X.
0.02 1e-1 38 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. C.G. S.X.
0.02 1e-1 38 At3g17760 821044 GAD5 (glutamate decarboxylase 5) F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAV C.G. S.X.
0.02 4e-1 36 At3g26090 822207 RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1) Encodes ArRGS1, a putative membrane receptor for D-glucose. Also functions as a regulator of G-protein signaling. Has GTPase-accelerating activity. Regulates the activity of AtGPA1. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA. C.G. S.X.
0.01 2e+0 34 At5g45640 834604 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA C.G. S.X.
0.01 2e+0 34 At4g22910 828390 FZR2 (FIZZY-RELATED 2) F:signal transducer activity;P:trichome branching, signal transduction, DNA endoreduplication, cell growth;C:chloroplast, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-9 63 Glycine max Gma.17867.1.S1_at BE658919 - - 2e-9 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.07 2e-13 75 Hordeum vulgare Contig14611_at Contig14611 - - 6e-13 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.12 2e-10 67 Oryza sativa Os12g0564400 AK059949.1 - Thylakoid lumenal 21.5 kDa protein, chloroplastprecursor 1e-10 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.39 2e-22 107 Populus trichocarpa Ptp.1140.1.A1_at CV251573 hypothetical protein - 1e-22 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.56987.1.S1_at CA638904 - - 3e-1 At5g38378 - C.G. S.X.
0.07 1e-4 46 Vitis vinifera 1613843_at CF404498 hypothetical protein LOC100259632 - 2e-4 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.4918.1.S1_at BG265353 hypothetical protein LOC100275558 - 7e+0 At5g01080 beta-galactosidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015979 The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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