Gene omics information

Query gene ID At4g15510
Gene name photosystem II reaction center PsbP family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8693.1At4g15510827223photosystem II reaction center PsbP family proteinF:calcium ion binding;P:photosynthesis;C:in 9 components;PBOS.X.H.G.
0.7284.8At3g47650823919bundle-sheath defective protein 2 family / bsd2 familyF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POBS.X.H.G.
0.7284.8At2g03420814871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.7284.8At4g11175826719translation initiation factor IF-1, chloroplast, putativeF:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOPS.X.H.G.
0.7184.2At1g68590843189plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeF:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBPS.X.H.G.
0.7184.2At2g24090816943ribosomal protein L35 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMFS.X.H.G.
0.7083.5At1g43560840939Aty2 (Arabidopsis thioredoxin y2)F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAVS.X.H.G.
0.7083.5At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMS.X.H.G.
0.6982.9At5g45930834633CHLI2 (MAGNESIUM CHELATASE I2)encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.S.X.H.G.
0.6882.2At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
27.499.7GSM268008Col-0, Time 0, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
24.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
16.299.5GSM268009Col-0, Time 0, rep-BGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.079e-27121At4g15560827230CLA1 (CLOROPLASTOS ALTERADOS 1)Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in ArabidopsisC.G.S.X.
0.021e-138At3g215008217041-deoxy-D-xylulose-5-phosphate synthaseEncodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.C.G.S.X.
0.021e-138At3g17760821044GAD5 (glutamate decarboxylase 5)F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAVC.G.S.X.
0.024e-136At3g26090822207RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1)Encodes ArRGS1, a putative membrane receptor for D-glucose. Also functions as a regulator of G-protein signaling. Has GTPase-accelerating activity. Regulates the activity of AtGPA1. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA.C.G.S.X.
0.012e+034At5g45640834604subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMAC.G.S.X.
0.012e+034At4g22910828390FZR2 (FIZZY-RELATED 2)F:signal transducer activity;P:trichome branching, signal transduction, DNA endoreduplication, cell growth;C:chloroplast, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.153e-963Glycine maxGma.17867.1.S1_atBE658919--2e-9At4g15510photosystem II reaction center PsbP family proteinC.G.S.X.
0.072e-1375Hordeum vulgareContig14611_atContig14611--6e-13At4g15510photosystem II reaction center PsbP family proteinC.G.S.X.
0.122e-1067Oryza sativaOs12g0564400AK059949.1-Thylakoid lumenal 21.5 kDa protein, chloroplastprecursor1e-10At4g15510photosystem II reaction center PsbP family proteinC.G.S.X.
0.392e-22107Populus trichocarpaPtp.1140.1.A1_atCV251573hypothetical protein-1e-22At4g15510photosystem II reaction center PsbP family proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.56987.1.S1_atCA638904--3e-1At5g38378-C.G.S.X.
0.071e-446Vitis vinifera1613843_atCF404498hypothetical protein LOC100259632-2e-4At4g15510photosystem II reaction center PsbP family proteinC.G.S.X.
0.023e+032Zea maysZm.4918.1.S1_atBG265353hypothetical protein LOC100275558-7e+0At5g01080beta-galactosidaseC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
LGO:0015979The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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