CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g15470

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g15470 827218 - F:unknown;P:unknown;C:unknown;BOMPFV S.X. H.G.
0.80 89.8 At5g53310 835412 myosin heavy chain-related F:motor activity;P:biological_process unknown;C:plasma membrane;MOFP S.X. H.G.
0.50 65.3 At5g42000 834205 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO S.X. H.G.
0.27 26.2 At5g54680 835557 ILR3 (iaa-leucine resistant3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBA S.X. H.G.
0.21 15.8 At1g03900 839378 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.3 99.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
7.3 98.8 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
7.2 98.8 GSM133718 Urwin_A-2-Urwin-Inf_SLD GSE5724 Plant gene expression associated with susceptibility to nematodes
6.9 98.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
6.5 98.6 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
6.3 98.6 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
6.1 98.5 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
6.0 98.5 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
5.9 98.5 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
5.9 98.5 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 1e-4 48 At4g02690 828203 glutamate binding F:glutamate binding;P:unknown;C:unknown;BOMPFV C.G. S.X.
0.03 2e-3 44 At5g02750 831806 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
0.03 6e-3 42 At1g55770 842026 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.07 4e-1 36 At3g63310 825506 glutamate binding F:glutamate binding;P:unknown;C:unknown;BOMPFV C.G. S.X.
0.01 4e-1 36 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. C.G. S.X.
0.01 4e-1 36 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM C.G. S.X.
0.01 2e+0 34 At5g18070 831926 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-4 48 Glycine max Gma.6323.1.S1_a_at BE022612 - - 1e-4 At4g15470 - C.G. S.X.
0.09 3e-6 52 Hordeum vulgare Contig7420_at Contig7420 - - 1e-5 At4g15470 - C.G. S.X.
0.07 8e-4 46 Oryza sativa Os07g0177300 AK073781.1 - Protein of unknown function UPF0005 family protein 6e-4 At4g15470 - C.G. S.X.
0.20 7e-19 95 Populus trichocarpa Ptp.5787.1.S1_s_at CV225434 hypothetical protein - 7e-19 At4g15470 - C.G. S.X.
0.09 3e-2 40 Triticum aestivum Ta.28690.3.S1_at BJ265090 - - 2e-2 At4g15470 - C.G. S.X.
0.21 2e-15 81 Vitis vinifera 1614051_at CF206238.1 hypothetical protein LOC100266616 - 1e-14 At4g15470 - C.G. S.X.
0.09 3e-6 52 Zea mays Zm.6301.1.S1_at AI691314 hypothetical protein LOC100191683 - 2e-3 At3g63310 glutamate binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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