CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g15415

Gene name ATB' GAMMA

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At4g15415 827211 ATB' GAMMA B' regulatory subunit of PP2A (AtB'gamma) S.X. H.G.
0.46 59.8 At5g21040 832228 FBX2 (F-BOX PROTEIN 2) Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. S.X. H.G.
0.43 55.3 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA S.X. H.G.
0.32 35.7 At5g46190 834661 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.20 14.4 At2g28390 817387 SAND family protein F:unknown;P:unknown;C:chloroplast;MFOBPAV S.X. H.G.
0.17 10.2 At2g30980 817649 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.8 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.8 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.6 99.0 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.2 99.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.0 98.9 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
7.0 98.7 E-ATMX-6-raw-cel-1308219150
6.8 98.7 E-MEXP-849-raw-cel-1181980846
6.7 98.7 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
6.5 98.6 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
6.5 98.6 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 0 864 At3g21650 821719 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:protein phosphatase type 2A complex;MPOFBA C.G. S.X.
0.15 2e-13 77 At3g09880 820146 ATB' BETA Encodes B' regulatory subunit of PP2A (AtB'beta). C.G. S.X.
0.20 9e-10 65 At1g13460 837906 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:chloroplast, protein phosphatase type 2A complex;MPOF C.G. S.X.
0.06 8e-7 56 At5g03470 831828 ATB' ALPHA Encodes B' regulatory subunit of PP2A (AtB'alpha), putative size of 57 kDa. C.G. S.X.
0.12 8e-7 56 At3g26030 822200 ATB' DELTA protein phosphatase 2A regulatory subunit isoform B' delta C.G. S.X.
0.26 2e-4 48 At3g26020 822199 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:protein phosphatase type 2A complex;MOPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 2e-39 165 Glycine max GmaAffx.51197.2.S1_at BM887157 - - 3e-40 At4g15415 ATB' GAMMA C.G. S.X.
0.22 5e-16 85 Hordeum vulgare Contig10916_at Contig10916 - - 8e-16 At4g15415 ATB' GAMMA C.G. S.X.
0.10 1e-19 99 Oryza sativa Os04g0485100 AK103052.1 - Protein phosphatase 2A B'kappa subunit 2e-18 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
0.36 2e-30 135 Populus trichocarpa PtpAffx.12180.2.S1_at CK091689 hypothetical protein - 2e-35 At3g21650 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
0.26 4e-9 63 Triticum aestivum TaAffx.30343.1.S1_at CA626029 - - 1e-9 At4g15415 ATB' GAMMA C.G. S.X.
0.29 8e-23 107 Vitis vinifera 1622878_at CD717524 - - 5e-57 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
0.09 1e-6 54 Zea mays Zm.11384.1.A1_at CB351291 - - 7e-21 At3g21650 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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