CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g15210

Gene name BAM5 (BETA-AMYLASE 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. S.X. H.G.
0.65 79.6 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. S.X. H.G.
0.65 79.6 At4g14695 827120 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO S.X. H.G.
0.57 73.8 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. S.X. H.G.
0.57 73.8 At3g02310 821151 SEP2 (SEPALLATA 2) MADS-box protein, binds K domain of AG in vivo S.X. H.G.
0.57 73.8 At3g54340 824601 AP3 (APETALA 3) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. S.X. H.G.
0.55 70.6 At1g78960 844236 ATLUP2 Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. S.X. H.G.
0.54 69.5 At3g10570 820222 CYP77A6 member of CYP77A S.X. H.G.
0.54 69.5 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.53 68.6 At4g16590 827360 ATCSLA01 encodes a gene similar to cellulose synthase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.1 99.9 E-MEXP-285-raw-cel-440783152
90.6 99.9 E-MEXP-285-raw-cel-440783213
67.7 99.9 GSM47042 hyl1 32 GSE2473 Small RNA biogenesis mutants
66.8 99.8 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
66.6 99.8 GSM47038 hst-15 28 GSE2473 Small RNA biogenesis mutants
65.6 99.8 GSM47040 hyl1 30 GSE2473 Small RNA biogenesis mutants
61.6 99.8 GSM47039 hst-15 29 GSE2473 Small RNA biogenesis mutants
61.3 99.8 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
61.0 99.8 GSM47037 hst-15 27 GSE2473 Small RNA biogenesis mutants
60.5 99.8 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 5e-2 40 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO C.G. S.X.
0.02 7e-1 36 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF C.G. S.X.
0.02 7e-1 36 At5g39630 833959 vesicle transport v-SNARE family protein F:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAV C.G. S.X.
0.01 7e-1 36 At2g27300 817273 NTL8 (NTM1-LIKE 8) F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P C.G. S.X.
0.01 7e-1 36 At2g45880 819196 BAM7 (BETA-AMYLASE 7) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PBOF C.G. S.X.
0.01 7e-1 36 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-3 46 Glycine max Gma.595.1.S1_at AB004271.1 beta-amylase - 2e-11 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.08 2e-5 50 Hordeum vulgare Contig1411_s_at Contig1411 - - 6e-5 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.07 2e-6 56 Oryza sativa Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - C.G. S.X.
0.11 4e-3 44 Populus trichocarpa Ptp.3245.1.S1_s_at CV276464 hypothetical protein - 7e-14 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.13 2e-7 57 Triticum aestivum Ta.3.1.S1_at BJ265463 beta-amylase - 3e-7 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.03 1e-2 40 Vitis vinifera 1610646_s_at CA813636 hypothetical protein LOC100242636 - 2e-57 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.02 1e-3 44 Zea mays Zm.80.1.A1_at CD972407 beta-amylase - 6e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0080027 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore.
X GO:0005983 The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00005 Starch and maltose degradation
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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