CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g15100

Gene name scpl30 (serine carboxypeptidase-like 30)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.24 20.7 At4g15100 827176 scpl30 (serine carboxypeptidase-like 30) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB S.X. H.G.
0.40 50.8 At2g15780 816073 glycine-rich protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVA S.X. H.G.
0.04 0.9 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF S.X. H.G.
0.04 0.9 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.02 0.4 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
418.3 100.0 GSM142652 MC002_ATH1_A10.3-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
381.8 100.0 GSM142651 MC002_ATH1_A10.2-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
368.7 100.0 GSM142650 MC002_ATH1_A10.1-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
306.3 100.0 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
296.3 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
270.0 100.0 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
247.2 100.0 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
209.4 100.0 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
192.2 100.0 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
189.8 100.0 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 0 1027 At1g11080 837649 scpl31 (serine carboxypeptidase-like 31) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.37 1e-26 121 At1g61130 842406 SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.04 1e-2 42 At3g17180 820975 scpl33 (serine carboxypeptidase-like 33) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.02 4e-2 40 At3g13190 820509 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 6e-1 36 At4g30610 829184 BRS1 (BRI1 SUPPRESSOR 1) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease. C.G. S.X.
0.01 2e+0 34 At5g01400 831597 ESP4 (ENHANCED SILENCING PHENOTYPE 4) Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-5 50 Glycine max Gma.869.1.S1_at BE822531 - - 4e-5 At4g15100 scpl30 (serine carboxypeptidase-like 30) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig8855_at Contig8855 - - 1e-3 At5g23210 SCPL34 C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.6778.1.S1_at - - - 0 C.G. S.X.
0.20 2e-8 61 Populus trichocarpa Ptp.3474.1.S1_at DN492800 hypothetical protein - 2e-15 At1g61130 SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32) C.G. S.X.
0.03 6e-1 36 Triticum aestivum Ta.6932.3.S1_a_at CA647942 - - 5e-18 At4g30810 scpl29 (serine carboxypeptidase-like 29) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1607564_at CB350061 UPF0497 membrane protein 4 - 1e+1 At5g41530 - C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.1404.1.S1_at 40794996-79 - - 1e-3 Atmg00690 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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