Gene omics information

Query gene ID At4g14680
Gene name APS3
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At4g14680827118APS3ATP sulfurylaseS.X.H.G.
0.6378.1At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.6277.3At3g59080825077aspartyl protease family proteinF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOS.X.H.G.
0.6075.7At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.S.X.H.G.
0.5974.7At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.S.X.H.G.
0.5873.8At2g26190817159calmodulin-binding family proteinF:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOBS.X.H.G.
0.5673.0At4g30210829144ATR2 (ARABIDOPSIS P450 REDUCTASE 2)Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.S.X.H.G.
0.5570.6At1g28380839735NSL1 (necrotic spotted lesions 1)This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.S.X.H.G.
0.5368.6At1g07135837224glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAS.X.H.G.
0.5267.4At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
98.199.9GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
73.499.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
60.499.8GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
57.599.8GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutants
54.799.8GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
48.699.8GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
45.099.8GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.700906At3g22890821861APS1 (ATP SULFURYLASE 1)encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis.C.G.S.X.
0.476e-94345At5g43780834400APS4sulfate adenylyltransferase, ATP sulfurylaseC.G.S.X.
0.366e-26119At1g19920838580APS2encodes a chloroplast form of ATP sulfurylaseC.G.S.X.
0.013e-344At1g30780839959F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBVFAC.G.S.X.
0.022e-138At3g61410825313-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.017e-136At5g49160834975MET1 (METHYLTRANSFERASE 1)Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.C.G.S.X.
0.017e-136At4g11720826777HAP2 (HAPLESS 2)Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane.C.G.S.X.
0.017e-136At3g25210822114-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMBAC.G.S.X.
0.027e-136At2g44690819077ARAC9A member of ROP GTPase gene family.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.412e-75284Glycine maxGma.2313.1.S1_atAF452454.1ATP sulfurylase-1e-83At3g22890APS1 (ATP SULFURYLASE 1)C.G.S.X.
0.345e-34145Hordeum vulgareContig2776_atContig2776--5e-20At3g22890APS1 (ATP SULFURYLASE 1)C.G.S.X.
0.289e-42173Oryza sativaOs03g0743900AK099593.1-ATP sulfurylase (EC (ATP SULFURYLASE 1)C.G.S.X.
0.431e-83311Populus trichocarpaPtpAffx.43573.2.A1_atCV270806hypothetical protein-5e-84At4g14680APS3C.G.S.X.
0.252e-26121Triticum aestivumTa.9352.1.S1_atCD870241--2e-14At3g22890APS1 (ATP SULFURYLASE 1)C.G.S.X.
0.048e-134Vitis vinifera1607986_atCF606959hypothetical protein LOC100252345-2e-49At1g19920APS2C.G.S.X.
0.255e-43174Zea maysZm.5050.1.S1_atAF016305.1ATP sulfurylase-1e-21At3g22890APS1 (ATP SULFURYLASE 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0000103The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00141Link to KaPPA-View 4Sulfur and cysteine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00230Link to KEGG PATHWAYPurine metabolism
00450Link to KEGG PATHWAYSelenoamino acid metabolism
00920Link to KEGG PATHWAYSulfur metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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