CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g14630

Gene name GLP9 (GERMIN-LIKE PROTEIN 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.54 69.5 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. S.X. H.G.
0.94 96.7 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. S.X. H.G.
0.89 94.6 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.82 90.9 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.80 89.8 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.70 83.5 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.58 73.8 At1g33840 840280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.52 67.4 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
131.4 99.9 E-MEXP-828-raw-cel-1156922467
130.7 99.9 E-MEXP-828-raw-cel-1156922342
130.3 99.9 E-MEXP-828-raw-cel-1156922905
113.7 99.9 E-MEXP-828-raw-cel-1156922368
110.3 99.9 E-MEXP-828-raw-cel-1156922613
106.0 99.9 E-MEXP-828-raw-cel-1156922968
96.4 99.9 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
93.1 99.9 E-MEXP-828-raw-cel-1156922595
84.1 99.9 E-MEXP-828-raw-cel-1156922872
84.1 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 1e-40 167 At5g38940 833886 manganese ion binding / nutrient reservoir F:manganese ion binding, nutrient reservoir activity;P:response to salt stress;C:cell wall;PFOB C.G. S.X.
0.56 5e-31 135 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO C.G. S.X.
0.52 3e-26 119 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.52 4e-16 85 At5g38960 833888 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.22 2e-14 79 At5g38950 833887 germin-like protein-related F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 9e-8 57 At5g39160 833910 germin-like protein (GLP2a) (GLP5a) F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB C.G. S.X.
0.06 9e-8 57 At5g39190 833914 GER2 (GERMIN-LIKE PROTEIN 2) germin-like protein (GLP2a) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-1 38 Glycine max GmaAffx.25689.1.A1_at AW396739 - - 2e-4 At5g39100 GLP6 (GERMIN-LIKE PROTEIN 6) C.G. S.X.
0.10 3e-6 52 Hordeum vulgare Contig3155_s_at Contig3155 - - 8e-6 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) C.G. S.X.
0.11 7e-4 46 Oryza sativa Os08g0189100 AF042489.1 - Germin-like protein precursor 5e-4 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) C.G. S.X.
0.11 1e-1 38 Populus trichocarpa PtpAffx.216317.1.S1_at pmrna31026 hypothetical protein - 5e-3 At5g38910 germin-like protein, putative C.G. S.X.
0.09 6e-6 52 Triticum aestivum Ta.26173.1.A1_at CD452484 - - 1e-1 At5g38940 manganese ion binding / nutrient reservoir C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620937_at CF514682 hypothetical LOC100247171 - 8e-1 At3g24010 ING1 (INHIBITOR OF GROWTH 1) C.G. S.X.
0.11 4e-2 38 Zea mays Zm.11238.1.A1_at BM340814 - - 5e-3 At5g39100 GLP6 (GERMIN-LIKE PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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