CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g14590

Gene name emb2739 (embryo defective 2739)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At4g14590 827107 emb2739 (embryo defective 2739) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPO S.X. H.G.
0.33 38.1 At1g55970 842048 HAC4 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4) HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain. S.X. H.G.
0.33 38.1 At4g13330 826963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO S.X. H.G.
0.33 38.1 At5g08230 830719 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.17 10.2 At2g33760 817942 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:cellular_component unknown;POMFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
252.0 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
190.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
157.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
147.1 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
127.8 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
110.5 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
98.5 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
73.9 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
69.8 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At1g31190 840007 IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1). C.G. S.X.
0.01 8e-1 36 At4g33600 829500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOB C.G. S.X.
0.01 8e-1 36 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. C.G. S.X.
0.01 3e+0 34 Atcg01040 - - hypothetical protein C.G. S.X.
0.02 3e+0 34 At5g45710 834610 RHA1 (ROOT HANDEDNESS 1) member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.01 3e+0 34 At5g47460 834796 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 3e+0 34 At5g63810 836501 BGAL10 (beta-galactosidase 10) member of Glycoside Hydrolase Family 35 C.G. S.X.
0.01 3e+0 34 At4g36440 829796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-6 56 Glycine max GmaAffx.65277.1.A1_at BU547814 - - 3e-7 At4g14590 emb2739 (embryo defective 2739) C.G. S.X.
0.02 6e+0 32 Hordeum vulgare HVSMEl0001K15r2_at HVSMEl0001K15r2 - - 2e+0 At2g43445 - C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.32088.1.S1_at - - - 0 C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.200899.1.S1_at pmrna1767 hypothetical protein - 2e-3 At4g14590 emb2739 (embryo defective 2739) C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.85366.1.S1_at CA623341 - - 5e+0 At5g48350 nucleic acid binding C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1620551_s_at CB339855 hypothetical protein LOC100266698 - 4e+0 At5g23212 - C.G. S.X.
0.02 8e-2 38 Zea mays Zm.10069.1.A1_at AY108373.1 - - 4e+0 At5g03460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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