Gene omics information

Query gene ID At4g14590
Gene name emb2739 (embryo defective 2739)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At4g14590827107emb2739 (embryo defective 2739)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOS.X.H.G.
0.3338.1At1g55970842048HAC4 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4)HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.S.X.H.G.
0.3338.1At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOS.X.H.G.
0.3338.1At5g08230830719PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.1710.2At2g33760817942pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
252.0100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
190.1100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
157.499.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
147.199.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
127.899.9GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
110.599.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
98.599.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
74.599.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
73.999.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
69.899.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At1g31190840007IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).C.G.S.X.
0.018e-136At4g33600829500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMOBC.G.S.X.
0.018e-136At4g21380827890ARK3 (A. THALIANA RECEPTOR KINASE 3)encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.C.G.S.X.
0.013e+034Atcg01040--hypothetical proteinC.G.S.X.
0.023e+034At5g45710834610RHA1 (ROOT HANDEDNESS 1)member of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
0.013e+034At5g47460834796pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.013e+034At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35C.G.S.X.
0.013e+034At4g36440829796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-656Glycine maxGmaAffx.65277.1.A1_atBU547814--3e-7At4g14590emb2739 (embryo defective 2739)C.G.S.X.
0.026e+032Hordeum vulgareHVSMEl0001K15r2_atHVSMEl0001K15r2--2e+0At2g43445-C.G.S.X.
0.026e+034Oryza sativaOsAffx.32088.1.S1_at---0C.G.S.X.
0.041e-346Populus trichocarpaPtpAffx.200899.1.S1_atpmrna1767hypothetical protein-2e-3At4g14590emb2739 (embryo defective 2739)C.G.S.X.
0.021e+132Triticum aestivumTaAffx.85366.1.S1_atCA623341--5e+0At5g48350nucleic acid bindingC.G.S.X.
0.024e+032Vitis vinifera1620551_s_atCB339855hypothetical protein LOC100266698-4e+0At5g23212-C.G.S.X.
0.028e-238Zea maysZm.10069.1.A1_atAY108373.1--4e+0At5g03460unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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