Gene omics information

Query gene ID At4g14560
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g14560827103IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.S.X.H.G.
0.3338.1At3g29760822663NLI interacting factor (NIF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVS.X.H.G.
0.3032.1At5g633808364574-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.S.X.H.G.
0.3032.1At1g11090837650hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVAS.X.H.G.
0.3032.1At1g35470840440SPla/RYanodine receptor (SPRY) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.2930.3At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVS.X.H.G.
0.2930.3At2g32450817806calcium-binding EF hand family proteinF:binding, zinc ion binding, calcium ion binding;P:unknown;C:plasma membrane;BOMAPFS.X.H.G.
0.2726.2At4g38900830045bZIP proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPBFAS.X.H.G.
0.2726.2At2g22830816814SQE2 (squalene epoxidase 2)F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:integral to membrane;BOFMPAS.X.H.G.
0.2624.4At1g80400844380zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
55.399.8GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
36.099.7GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
35.599.7GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
33.299.7GSM9632arf2-6_+IAA_2GSE630Auxin-mediated gene expression
32.199.7GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
31.399.7GSM25876IAA/B Treated - 1GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
30.399.7GSM25877IAA/B Treated - 2GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
29.999.7GSM25875IAA/A Treated - 3GSE1491Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.664e-77287At3g23030821877IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)auxin inducible gene expressed in the nucleusC.G.S.X.
0.479e-32137At5g43700834390ATAUX2-11 (AUXIN INDUCIBLE 2-11)Auxin inducible protein similar to transcription factors.C.G.S.X.
0.255e-1581At1g04240839570SHY2 (SHORT HYPOCOTYL 2)SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.C.G.S.X.
0.104e-1271At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.C.G.S.X.
0.091e-963At2g33310817894IAA13Auxin induced gene, IAA13 (IAA13).C.G.S.X.
0.107e-857At1g15580838128IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)auxin induced proteinC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.197e-1891Glycine maxGma.14647.1.S1_atCD414673--1e-14At5g43700ATAUX2-11 (AUXIN INDUCIBLE 2-11)C.G.S.X.
0.055e-754Hordeum vulgareContig5251_atContig5251--2e-6At2g22670IAA8C.G.S.X.
0.073e-859Oryza sativaOs01g0231000AK066156.1-Auxin-responsive protein (Aux/IAA) (Fragment)2e-13At1g04240SHY2 (SHORT HYPOCOTYL 2)C.G.S.X.
0.272e-21103Populus trichocarpaPtpAffx.7696.2.A1_a_atCV233510hypothetical protein-2e-21At4g14560IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)C.G.S.X.
0.087e-238Triticum aestivumTa.23069.2.S1_a_atCD872417--2e-2At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
0.252e-33141Vitis vinifera1616785_atCF211839hypothetical protein LOC100259648-1e-32At4g14560IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)C.G.S.X.
0.063e-548Zea maysZm.2321.3.A1_atBG841291hypothetical protein LOC100191581-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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