CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g14480

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g14480 827095 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.90 95.1 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P S.X. H.G.
0.90 95.1 At3g24140 822000 FMA (FAMA) Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell. S.X. H.G.
0.80 89.8 At2g21080 816643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO S.X. H.G.
0.80 89.8 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF S.X. H.G.
0.76 87.4 At1g11340 837676 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.74 86.1 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. S.X. H.G.
0.73 85.5 At5g25840 832653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.71 84.2 At1g79770 844316 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.67 81.6 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1082.4 100.0 E-MEXP-1443-raw-cel-1581869515
184.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
142.7 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
135.5 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
106.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
103.6 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
96.1 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.8 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
92.4 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
92.0 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-3 44 At1g09000 837421 ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) NPK1-related protein kinase 1S C.G. S.X.
0.01 2e-1 38 At4g30825 829206 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA C.G. S.X.
0.02 2e-1 38 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB C.G. S.X.
0.01 2e-1 38 At1g69770 843313 CMT3 (chromomethylase 3) Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. C.G. S.X.
0.01 2e-1 38 At1g73810 843717 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 7e-1 36 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 7e-1 36 At4g11460 826751 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-1 36 At4g24100 828510 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 38 Glycine max GmaAffx.86702.1.S1_at AI988662 - - 6e-28 At4g24100 protein kinase family protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig26342_at Contig26342 - - 5e-16 At1g48410 AGO1 (ARGONAUTE 1) C.G. S.X.
0.03 4e-1 38 Oryza sativa Os06g0486400 AK065283.1 - Protein kinase domain containing protein 6e-40 At5g14720 protein kinase family protein C.G. S.X.
0.22 1e-6 56 Populus trichocarpa PtpAffx.208189.1.S1_at pmrna16295 hypothetical protein - 7e-3 At4g14480 protein kinase family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.26502.1.A1_at CD491053 - - 2e-18 At4g24100 protein kinase family protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1611628_at CD719873 - - 1e-77 At4g10730 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.306.1.A1_at AI670439 - - 2e+0 At1g36020 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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