CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g14455

Gene name ATBET12

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. S.X. H.G.
0.57 73.8 At1g68765 843208 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. S.X. H.G.
0.57 73.8 At2g23270 816859 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At2g32030 817763 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVM S.X. H.G.
0.27 26.2 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
349.9 100.0 E-MEXP-807-raw-cel-1173273144
282.5 100.0 GSM39198 RRE1_Chitin4 GSE2169 rre1 and rre2 mutants
281.2 100.0 E-MEXP-807-raw-cel-1173273252
252.8 100.0 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
250.9 100.0 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
248.8 100.0 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
215.9 100.0 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
206.1 100.0 GSM39204 Col_Chitin2 GSE2169 rre1 and rre2 mutants
193.1 100.0 GSM39203 Col_Chitin1 GSE2169 rre1 and rre2 mutants
192.3 100.0 E-MEXP-807-raw-cel-1173273170
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-2 38 At4g30470 829170 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA C.G. S.X.
0.03 5e-2 38 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM C.G. S.X.
0.01 7e-1 34 At2g43900 818994 inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVA C.G. S.X.
0.02 7e-1 34 At1g51270 841550 structural molecule/ transmembrane receptor F:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFO C.G. S.X.
0.03 7e-1 34 At1g42990 840897 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. C.G. S.X.
0.03 3e+0 32 At5g62480 836368 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.03 3e+0 32 At5g45920 834632 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO C.G. S.X.
0.01 3e+0 32 At5g04020 830281 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:plasma membrane;OMBPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max HgAffx.13786.1.S1_at CB374147 - - 9e-1 At4g14455 ATBET12 C.G. S.X.
0.05 6e+0 30 Hordeum vulgare HVSMEm0005J23r2_at HVSMEm0005J23r2 - - 2e+0 At4g04580 myb family transcription factor C.G. S.X.
0.09 2e-9 63 Oryza sativa Os08g0563300 AK062315.1 - - 6e-6 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.206579.1.S1_x_at pmrna13050 hypothetical protein - 3e-1 At4g14455 ATBET12 C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.98024.1.A1_at CD492171 - - 3e+0 At4g14455 ATBET12 C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1622263_at CB339884 - - 8e-1 At3g11930 universal stress protein (USP) family protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.753.1.A1_at AI745901 hypothetical protein LOC100279229 - 8e-1 At3g29633 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006888 The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
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