CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g14200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.09 2.8 At4g14200 827060 unknown protein F:unknown;P:biological_process unknown;C:unknown;MBOFPA S.X. H.G.
0.43 55.3 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.27 26.2 At3g53190 824485 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO S.X. H.G.
0.27 26.2 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. S.X. H.G.
0.27 26.2 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
108.1 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
54.1 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.3 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.8 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.6 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.6 99.7 GSM242961 Mock day 7 (day7E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
32.5 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.3 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-2 40 At2g47500 819363 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP C.G. S.X.
0.01 7e-2 40 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.01 3e-1 38 At5g52930 835370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At1g67630 843086 POLA2 (DNA POLYMERASE ALPHA 2) F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOP C.G. S.X.
0.01 1e+0 36 At5g62700 836391 TUB3 encodes tubulin beta-2/beta-3 chain C.G. S.X.
0.01 1e+0 36 At5g62690 836390 TUB2 encodes tubulin beta-2/beta-3 chain C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 36 Glycine max GmaAffx.66648.1.S1_at AW509011 - - 1e-15 At1g23880 NHL repeat-containing protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HF17J23r_at HF17J23r - - 3e+0 At1g49290 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os06g0705500 AK060142.1 - Ubiquitin system component Cue domain containingprotein 2e+0 At3g24700 F-box family protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.218220.1.S1_x_at pmrna33770 hypothetical protein - 1e-1 At1g01240 unknown protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.58678.1.S1_at CA617348 - - 2e+0 At4g01671 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1620966_at CF414903 hypothetical protein LOC100256915 - 6e+0 Atmg01200 - C.G. S.X.
0.01 2e+0 34 Zea mays Zm.2974.1.A1_at AW120131 - - 1e+0 At1g28610 GDSL-motif lipase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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