CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13860

Gene name glycine-rich RNA-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.49 63.5 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA S.X. H.G.
0.65 79.6 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.65 79.6 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.64 78.9 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase S.X. H.G.
0.58 73.8 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.58 73.8 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF S.X. H.G.
0.57 73.8 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. S.X. H.G.
0.56 73.0 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.54 69.5 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
155.4 99.9 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
145.7 99.9 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
135.9 99.9 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
129.1 99.9 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
109.5 99.9 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
100.2 99.9 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
93.0 99.9 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
91.0 99.9 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
74.5 99.9 GSM231200 chl1 at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
59.0 99.8 GSM131572 ATGE_98_C GSE5631 AtGenExpress: Developmental series (roots)
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 3e-5 48 At4g13850 827019 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. C.G. S.X.
0.07 8e-3 40 At3g23830 821966 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination. C.G. S.X.
0.04 3e-2 38 At2g37220 818299 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. C.G. S.X.
0.02 1e-1 36 At2g23350 816867 PAB4 (POLY(A) BINDING PROTEIN 4) polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. C.G. S.X.
0.04 5e-1 34 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-2 40 Glycine max Gma.16817.1.S1_s_at AF169205.1 glycine-rich RNA-binding protein - 2e-5 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.04 9e-1 32 Hordeum vulgare Contig6299_s_at Contig6299 - - 4e+0 At4g13860 glycine-rich RNA-binding protein, putative C.G. S.X.
0.04 2e-1 36 Oryza sativa Os07g0419500 CB661274 - UDP-glucose:sterol glucosyltransferase (EC2.4.1.173) 1e-7 At3g07020 UDP-glucose:sterol glucosyltransferase (UGT80A2) C.G. S.X.
0.06 7e-1 34 Populus trichocarpa PtpAffx.123067.1.S1_at BI122610 - - 1e-1 At1g25155 anthranilate synthase beta subunit, putative C.G. S.X.
0.04 5e-1 34 Triticum aestivum Ta.4864.1.S1_a_at BJ273049 - - 5e-1 At2g37510 RNA-binding protein, putative C.G. S.X.
0.05 1e-1 34 Vitis vinifera 1607011_at CF514748 - - 3e-7 At1g17640 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 5e-2 36 Zea mays Zm.12389.1.S1_at AY104821.1 glycine-rich RNA-binding protein 7 - 6e-1 At4g13860 glycine-rich RNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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