CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13720

Gene name inosine triphosphate pyrophosphatase, putative / HAM1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At4g13720 827006 inosine triphosphate pyrophosphatase, putative / HAM1 family protein F:hydrolase activity, pyrophosphatase activity;P:biological_process unknown;C:unknown;BOAMFPV S.X. H.G.
0.71 84.2 At5g35620 833534 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection. S.X. H.G.
0.68 82.2 At5g61170 836238 40S ribosomal protein S19 (RPS19C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole;MOAPFB S.X. H.G.
0.68 82.2 At2g47610 819374 60S ribosomal protein L7A (RPL7aA) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, chloroplast;MOFAP S.X. H.G.
0.67 81.6 At3g53430 824511 60S ribosomal protein L12 (RPL12B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MBAOFP S.X. H.G.
0.65 79.6 At1g18080 838388 ATARCA Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. S.X. H.G.
0.64 78.9 At3g07110 819897 60S ribosomal protein L13A (RPL13aA) F:structural constituent of ribosome;P:translation;C:in 6 components;BOMAPF S.X. H.G.
0.64 78.9 At5g02870 831756 60S ribosomal protein L4/L1 (RPL4D) F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPB S.X. H.G.
0.64 78.9 At3g25520 822138 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5) Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. S.X. H.G.
0.64 78.9 At4g00100 828167 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.8 99.6 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
11.9 99.3 GSM252664 Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
11.2 99.2 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.6 99.1 GSM265427 Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.6 99.1 GSM184839 Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.2 99.1 GSM184842 Arabidopsis, root, longitudinal zone 2, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.0 99.1 E-MEXP-1799-raw-cel-1665601146
8.7 99.0 GSM265419 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.5 99.0 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.2 99.0 GSM184834 Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At3g58660 825035 60S ribosomal protein-related F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV C.G. S.X.
0.02 3e-1 36 At2g25560 817094 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.02 1e+0 34 At5g05540 830437 SDN2 (SMALL RNA DEGRADING NUCLEASE 2) F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFPOB C.G. S.X.
0.01 1e+0 34 At5g49730 835036 ATFRO6 (FERRIC REDUCTION OXIDASE 6) Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. C.G. S.X.
0.01 1e+0 34 At5g47780 834829 GAUT4 (Galacturonosyltransferase 4) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.02 1e+0 34 At4g02290 828080 AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.02 1e+0 34 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. C.G. S.X.
0.01 1e+0 34 At4g24970 828599 ATP-binding region, ATPase-like domain-containing protein F:ATP binding;P:unknown;C:membrane;MOPBFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 9e-61 234 Glycine max Gma.4938.1.S1_a_at CD393756 - - 1e-60 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.26 2e-19 95 Hordeum vulgare Contig9233_at Contig9233 - - 5e-19 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.11 1e-2 42 Oryza sativa Os10g0457500 AK059744.1 - Inosine triphosphate pyrophosphatase (EC 3.6.1.19)(ITPase) (Inosine triphosphatase) (Putative oncogeneprotein hlc14-06-p) (My049 protein) 8e-3 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.40 1e-41 171 Populus trichocarpa PtpAffx.142388.1.S1_at BU875071 hypothetical protein - 8e-42 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.35 6e-18 91 Triticum aestivum Ta.5021.1.S1_a_at CK170163 - - 8e-18 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1619826_at CF372442 - - 6e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.04 1e-1 36 Zea mays ZmAffx.855.1.S1_at AI770678 - - 1e+1 At5g23035 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00230 Purine metabolism
00240 Pyrimidine metabolism
01100 Metabolic pathways
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