CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13610

Gene name MEE57 (maternal effect embryo arrest 57)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At4g13610 826994 MEE57 (maternal effect embryo arrest 57) F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFV S.X. H.G.
0.66 80.1 At5g35830 833569 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA S.X. H.G.
0.63 78.1 At4g07790 3769958 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.62 77.3 At3g42220 3769425 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.61 76.7 At4g04730 825808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.59 74.7 At2g15520 816044 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.58 73.8 At5g33260 3771121 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.57 73.8 At2g17330 3768013 - putative obtusifoliol 14-alpha demethylase. Expressed pseudogene. S.X. H.G.
0.56 73.0 At5g28550 832952 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At1g36230 840529 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
661.7 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
492.1 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
351.3 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
326.3 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
156.0 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
155.8 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
124.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
121.0 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
114.1 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 950 At4g08990 826477 DNA (cytosine-5-)-methyltransferase, putative F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:DNA methylation;C:nucleus;BOMPFAV C.G. S.X.
0.79 0 894 At4g14140 827052 DMT2 (DNA METHYLTRANSFERASE 2) This gene is predicted to encode a DNA methyltransferase. A plant line expressing an RNAi construct directed against DMT2 has reduced agrobacterium-mediated tumor formation. C.G. S.X.
0.57 7e-130 466 At5g49160 834975 MET1 (METHYLTRANSFERASE 1) Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation. C.G. S.X.
0.01 9e-3 44 At5g14580 831309 polyribonucleotide nucleotidyltransferase, putative F:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAF C.G. S.X.
0.01 3e-2 42 At5g65685 836698 soluble glycogen synthase-related F:starch synthase activity;P:unknown;C:chloroplast;BPOAM C.G. S.X.
0.01 1e-1 40 At4g02810 828170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 1e-1 40 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 5e-1 38 At5g60840 836205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 5e-1 38 At4g19990 827744 FRS1 (FAR1-related sequence 1) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-16 87 Glycine max GmaAffx.87379.1.S1_at BI699241 - - 9e-51 At5g49160 MET1 (METHYLTRANSFERASE 1) C.G. S.X.
0.01 1e-3 46 Hordeum vulgare Contig20736_at Contig20736 - - 2e-40 At4g26110 NAP1 C.G. S.X.
0.09 5e-6 56 Oryza sativa Os07g0182900 AK111461.1 - Cytosine-5 DNA methyltransferase MET1 (Fragment) 1e-36 At5g49160 MET1 (METHYLTRANSFERASE 1) C.G. S.X.
0.13 1e-20 103 Populus trichocarpa PtpAffx.204114.1.S1_at pmrna8113 DNA methyltransferase - 2e-44 At5g49160 MET1 (METHYLTRANSFERASE 1) C.G. S.X.
0.03 6e-10 67 Triticum aestivum Ta.9261.1.S1_at BT009495.1 - - 3e-19 At4g14140 DMT2 (DNA METHYLTRANSFERASE 2) C.G. S.X.
0.01 4e-2 40 Vitis vinifera 1610237_at CB976808 hypothetical protein LOC100251127 - 4e-2 At3g12100 cation efflux family protein / metal tolerance protein, putative C.G. S.X.
0.05 6e-2 40 Zea mays Zm.16993.1.A1_at AY093415.1 DNA methyl transferase1 - 5e-11 At4g08990 DNA (cytosine-5-)-methyltransferase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
C GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00270 Cysteine and methionine metabolism
01100 Metabolic pathways
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