CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13580

Gene name disease resistance-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
1.00 100.0 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
1.00 100.0 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
1.00 100.0 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.97 97.6 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.97 97.6 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.96 97.3 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV S.X. H.G.
0.93 96.4 At2g28670 817416 disease resistance-responsive family protein / fibroin-related F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
287.3 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
222.3 100.0 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
221.8 100.0 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
171.5 100.0 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
166.1 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
151.2 99.9 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
124.8 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
100.0 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
92.1 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
76.8 99.9 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 5e-142 504 At3g24020 821987 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB C.G. S.X.
0.02 4e-1 36 At5g54340 835522 zinc finger (C2H2 type) protein-related F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;POM C.G. S.X.
0.02 4e-1 36 At2g36020 818175 HVA22J (HVA22-LIKE PROTEIN J) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO C.G. S.X.
0.03 6e+0 32 Atcg00790 - - chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit C.G. S.X.
0.01 6e+0 32 At5g43930 834415 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPA C.G. S.X.
0.03 6e+0 32 At5g54850 835575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM C.G. S.X.
0.01 6e+0 32 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-3 44 Glycine max GmaAffx.74605.1.S1_at BU764968 - - 9e-4 At4g13580 disease resistance-responsive family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig18566_at Contig18566 - - 3e-10 At5g65980 auxin efflux carrier family protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os05g0405600 CF321959 - Cytochrome P450 family protein 8e+0 Atcg00560 - C.G. S.X.
0.22 3e-18 93 Populus trichocarpa PtpAffx.203435.1.S1_at pmrna6848 hypothetical protein - 2e-18 At4g13580 disease resistance-responsive family protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.8133.1.S1_at CA634575 - - 3e+0 At4g02482 chloroplast outer envelope GTP-binding protein, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1606737_at BQ795334 - - 3e+0 At2g45860 unknown protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.428.1.A1_at AI676868 hypothetical protein LOC100193500 - 2e-1 At3g18630 uracil DNA glycosylase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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