Gene omics information

Query gene ID At4g13510
Gene name AMT1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.S.X.H.G.
0.5065.3At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAS.X.H.G.
0.3338.1At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.3338.1At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.1710.2At1g22070838812TGA3Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.099.6GSM128687Underwood_1-40_E.coli-TUV86-2-fliC-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.399.6GSM128664Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.799.6GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.199.6GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.699.6GSM128683Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.499.6GSM128674Underwood_1-26_hrpA-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.199.6GSM128669Underwood_1-22_hrpAfliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.499.5GSM128685Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.399.5GSM128684Underwood_1-37_E.coli-0157-H7-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
17.999.5GSM128671Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.501e-67258At3g24300822018AMT1Encodes a plasma membrane localized ammonium transporter.C.G.S.X.
0.533e-40167At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAC.G.S.X.
0.321e-36155At4g28700828988AMT1F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPAC.G.S.X.
0.231e-27125At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.C.G.S.X.
0.015e-240At2g48030819415endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:unknown;C:mitochondrion;BOPMC.G.S.X.
0.012e-138At2g36490818224DML1 (DEMETER-LIKE 1)A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants, an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1, a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG, CpNpG or CpNpN), although many others are affected primarily in non-CpG contexts.C.G.S.X.
0.012e-138At1g28010839694PGP14 (P-GLYCOPROTEIN 14)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVC.G.S.X.
0.017e-136At4g27890828902nuclear movement family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.15984.1.S1_atAI736435--8e-1At2g27535ribosomal protein L10A family proteinC.G.S.X.
0.101e-448Hordeum vulgareContig11711_atContig11711--1e-4At4g13510AMT1C.G.S.X.
0.203e-1791Oryza sativaOs02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1C.G.S.X.
0.261e-30135Populus trichocarpaPtp.5712.1.S1_atCK113355ammonium transporter-3e-28At1g64780ATAMT1C.G.S.X.
0.162e-20101Triticum aestivumTa.12823.1.S1_atCA638403Ammonium transporter Amt1;1-2e-20At4g13510AMT1C.G.S.X.
0.024e+032Vitis vinifera1619221_atAY427190.1hypothetical protein LOC100249723-2e+0At1g19210AP2 domain-containing transcription factor, putativeC.G.S.X.
0.025e+032Zea maysZm.9415.2.A1_atBM348481--7e-2At5g01075beta-galactosidaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0051258The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
XGO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
CGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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