CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13340

Gene name leucine-rich repeat family protein / extensin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA S.X. H.G.
0.46 59.8 At4g26690 828776 SHV3 (SHAVEN 3) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. S.X. H.G.
0.44 57.2 At1g61100 842403 disease resistance protein (TIR class), putative F:unknown;P:defense response;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.30 32.1 At4g37450 829900 AGP18 (ARABINOGALACTAN PROTEIN 18) AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. S.X. H.G.
0.29 30.3 At3g11700 820342 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOM S.X. H.G.
0.03 0.6 At2g25800 817122 - F:unknown;P:biological_process unknown;C:unknown;POMFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
173.8 100.0 E-MEXP-739-raw-cel-1099467419
134.1 99.9 E-MEXP-739-raw-cel-1099467470
125.1 99.9 E-MEXP-739-raw-cel-1099467436
120.7 99.9 E-MEXP-739-raw-cel-1099467402
111.0 99.9 E-MEXP-739-raw-cel-1099467453
107.6 99.9 E-MEXP-739-raw-cel-1099467487
87.5 99.9 GSM128727 Pieterse_1-13_Mpersicae-48h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
73.5 99.9 GSM128728 Pieterse_1-14_Mpersicae-72h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
51.5 99.8 E-MEXP-1725-raw-cel-1669614603
51.0 99.8 E-MEXP-1573-raw-cel-1617523353
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 0 995 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.38 0 688 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA C.G. S.X.
0.06 8e-11 69 At5g25550 832630 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e-4 48 At3g18810 821414 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVA C.G. S.X.
0.02 3e-4 48 At1g14686 838032 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PF C.G. S.X.
0.02 3e-4 48 At1g36940 840603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e-3 46 At5g22090 832270 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBV C.G. S.X.
0.02 1e-3 46 At5g58470 835960 TAF15b (TBP-ASSOCIATED FACTOR 15b) F:binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-3 46 Glycine max HgAffx.9752.1.S1_at CB378749 - - 1e-3 At1g54215 proline-rich family protein C.G. S.X.
0.02 2e-3 44 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.02 2e-6 56 Oryza sativa Os02g0126900 9630.m00248 - Phosphatidate cytidylyltransferase family protein 4e-17 At2g45150 phosphatidate cytidylyltransferase family protein C.G. S.X.
0.15 1e-4 50 Populus trichocarpa PtpAffx.217618.1.S1_s_at pmrna32958 hypothetical protein - 4e-5 At4g13340 leucine-rich repeat family protein / extensin family protein C.G. S.X.
0.03 8e-2 40 Triticum aestivum TaAffx.86293.1.S1_x_at CA612009 - - 6e-2 At4g08400 proline-rich extensin-like family protein C.G. S.X.
0.02 2e-5 50 Vitis vinifera 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein C.G. S.X.
0.02 8e-3 42 Zea mays Zm.4487.1.A1_at AI734409 SAM-dependent methyltransferase - 2e+0 At3g53235 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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