Gene omics information

Query gene ID At4g13280
Gene name TPS12 (TERPENOID SYNTHASE 12)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.S.X.H.G.
0.4457.2At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.S.X.H.G.
0.3541.6At1g53990841837GLIP3Contains lipase signature motif and GDSL domain.S.X.H.G.
0.3338.1At5g44160834439NUC (nutcracker)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFS.X.H.G.
0.3032.1At5g65790836708MYB68 (MYB DOMAIN PROTEIN 68)Encodes a putative MYB transcription factor.S.X.H.G.
0.2319.3At1g67710843096ARR11 (RESPONSE REGULATOR 11)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.S.X.H.G.
0.2217.5At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBS.X.H.G.
0.2115.8At4g37340829889CYP81D3member of CYP81DS.X.H.G.
0.2115.8At2g28970817446leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.2115.8At1g68940843228armadillo/beta-catenin repeat protein-related / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
213.5100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
208.3100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
207.0100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
195.0100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
179.1100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
174.3100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
167.7100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
157.299.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
156.199.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
153.999.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8001784At4g13300826960TPS13 (TERPENOID SYNTHASE 13)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.C.G.S.X.
0.113e-28127At4g15870827268ATTS1encodes a putative terpene synthaseC.G.S.X.
0.111e-1481At1g48820841304terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POC.G.S.X.
0.079e-1375At4g20210827768terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;POC.G.S.X.
0.099e-1375At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOC.G.S.X.
0.089e-1065At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBC.G.S.X.
0.063e-963At3g29110822559terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POC.G.S.X.
0.085e-859At4g20200827766terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POFC.G.S.X.
0.132e-757At5g44630834491terpene synthase/cyclase family proteinEncodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxGmaAffx.70726.1.S1_atAI794746--8e-1At1g57770amine oxidase familyC.G.S.X.
0.034e-136Hordeum vulgareHF21B24r_s_atHF21B24r--6e-2At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeC.G.S.X.
0.026e+034Oryza sativaOsAffx.24749.1.S1_at---0C.G.S.X.
0.023e-138Populus trichocarpaPtpAffx.86482.1.S1_atDN492474--5e+0At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeC.G.S.X.
0.023e+034Triticum aestivumTaAffx.113916.1.S1_atCA601471--7e-5At1g36280adenylosuccinate lyase, putative / adenylosuccinase, putativeC.G.S.X.
0.022e-136Vitis vinifera1616025_atCF607089hypothetical protein LOC100257715-2e-21At1g49540nucleotide bindingC.G.S.X.
0.023e-136Zea maysZm.11387.1.A1_atBM350291--4e-1At1g71930VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0016106The chemical reactions and pathways resulting in the formation of sesquiterpenoid compounds, terpenoids with three isoprene units.
XGO:0045338The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00265Link to KaPPA-View 4Sesquiterpenoid biosynthesis
00393Link to KaPPA-View 4Monoterpenoid biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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