Gene omics information

Query gene ID At4g13235
Gene name EDA21 (embryo sac development arrest 21)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At4g13235826940EDA21 (embryo sac development arrest 21)Encodes a defensin-like (DEFL) family protein.S.X.H.G.
0.6781.6At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6781.6At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.6781.6At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.S.X.H.G.
0.6378.1At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.6176.7At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
0.6075.7At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVS.X.H.G.
0.5773.8At1g34670840371AtMYB93 (myb domain protein 93)Member of the R2R3 factor gene family.S.X.H.G.
0.5773.8At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBS.X.H.G.
0.5773.8At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
125.499.9GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
98.099.9GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
88.199.9GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
86.699.9GSM226551Slice9JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
74.499.9GSM226541L11SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
73.399.9GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
58.699.8GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with salt
56.699.8GSM184553Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
56.299.8GSM75509Col-0 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
54.199.8GSM226550Slice8JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-136At5g27220832780protein transport protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.061e-136At2g32380817799-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOC.G.S.X.
0.035e-134At1g53460841781unknown proteinF:unknown;P:unknown;C:unknown;OMPFBAVC.G.S.X.
0.022e+032At5g15140831366aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAC.G.S.X.
0.022e+032At5g24880832557-F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.022e+032At5g18720831990-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.012e+032At5g57035835807ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAC.G.S.X.
0.032e+032At5g46240834666KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.50.6 μm diameter microdomains at the plasma membrane surface.C.G.S.X.
0.012e+032At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-136Glycine maxHgAffx.946.1.A1_atCK351753--3e+0At2g14282SCRL18 (SCR-Like 18)C.G.S.X.
0.056e-236Hordeum vulgareHA08e19r_atHA08e19r--5e-8At5g50460protein transport protein SEC61 gamma subunit, putativeC.G.S.X.
0.034e+032Oryza sativaOs11g05866009639.m03406--9e-1At3g61920unknown proteinC.G.S.X.
0.077e-134Populus trichocarpaPtpAffx.209718.1.S1_atpmrna19182hypothetical protein-4e-12At5g28740transcription-coupled DNA repair protein-relatedC.G.S.X.
0.042e+032Triticum aestivumTaAffx.95892.2.S1_atCA710722--4e+0At4g13235EDA21 (embryo sac development arrest 21)C.G.S.X.
0.042e+030Vitis vinifera1609038_atCB348770hypothetical protein LOC100249262-4e+0At5g22650HD2B (HISTONE DEACETYLASE 2B)C.G.S.X.
0.043e+030Zea maysZm.3093.1.S1_atCF002923--1e+1At4g13235EDA21 (embryo sac development arrest 21)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009553The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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