CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g13235

Gene name EDA21 (embryo sac development arrest 21)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. S.X. H.G.
0.67 81.6 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.67 81.6 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.67 81.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. S.X. H.G.
0.63 78.1 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.61 76.7 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.60 75.7 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
0.57 73.8 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. S.X. H.G.
0.57 73.8 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.57 73.8 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.4 99.9 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
98.0 99.9 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
88.1 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
86.6 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
74.4 99.9 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
73.3 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
58.6 99.8 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
56.6 99.8 GSM184553 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
56.2 99.8 GSM75509 Col-0 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
54.1 99.8 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 36 At5g27220 832780 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.06 1e-1 36 At2g32380 817799 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO C.G. S.X.
0.03 5e-1 34 At1g53460 841781 unknown protein F:unknown;P:unknown;C:unknown;OMPFBAV C.G. S.X.
0.02 2e+0 32 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA C.G. S.X.
0.02 2e+0 32 At5g24880 832557 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 2e+0 32 At5g18720 831990 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e+0 32 At5g57035 835807 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ ubiquitin-protein ligase F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.03 2e+0 32 At5g46240 834666 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface. C.G. S.X.
0.01 2e+0 32 At2g25540 817092 CESA10 (CELLULOSE SYNTHASE 10) cellulose synthase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Glycine max HgAffx.946.1.A1_at CK351753 - - 3e+0 At2g14282 SCRL18 (SCR-Like 18) C.G. S.X.
0.05 6e-2 36 Hordeum vulgare HA08e19r_at HA08e19r - - 5e-8 At5g50460 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.03 4e+0 32 Oryza sativa Os11g0586600 9639.m03406 - - 9e-1 At3g61920 unknown protein C.G. S.X.
0.07 7e-1 34 Populus trichocarpa PtpAffx.209718.1.S1_at pmrna19182 hypothetical protein - 4e-12 At5g28740 transcription-coupled DNA repair protein-related C.G. S.X.
0.04 2e+0 32 Triticum aestivum TaAffx.95892.2.S1_at CA710722 - - 4e+0 At4g13235 EDA21 (embryo sac development arrest 21) C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1609038_at CB348770 hypothetical protein LOC100249262 - 4e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) C.G. S.X.
0.04 3e+0 30 Zea mays Zm.3093.1.S1_at CF002923 - - 1e+1 At4g13235 EDA21 (embryo sac development arrest 21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009553 The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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