Gene omics information

Query gene ID At4g13210
Gene name lyase/ pectate lyase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g13210826936lyase/ pectate lyaseF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFOS.X.H.G.
0.4963.5At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.2726.2At5g06940830585leucine-rich repeat family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.2624.4At3g01140821209MYB106 (myb domain protein 106)Encodes a putative transcription factor that is a member of the MYB family. Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.S.X.H.G.
0.2522.6At2g20240816543unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.2420.7At1g65620842873AS2 (ASYMMETRIC LEAVES 2)required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.S.X.H.G.
0.2217.5At3g05980819769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFS.X.H.G.
0.2014.4At4g11450826749unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PMOS.X.H.G.
0.1912.7At4g39790830137unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMOS.X.H.G.
0.1912.7At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
590.6100.0GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
391.3100.0GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
285.7100.0GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
112.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
108.699.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
98.999.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
84.099.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
66.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
63.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.750684At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.456e-106385At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOC.G.S.X.
0.421e-88327At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.279e-34145At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.369e-34145At1g04680839452pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
0.214e-33143At3g24230822010pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.161e-29131At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
0.119e-28125At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
0.178e-25115At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.228e-26119Glycine maxGma.2210.1.S1_atAW309542--1e-67At5g48900pectate lyase family proteinC.G.S.X.
0.129e-1787Hordeum vulgareContig11004_atContig11004--3e-22At3g07010pectate lyase family proteinC.G.S.X.
0.145e-34147Oryza sativaOs04g0137100AK060609.1-Pectate lyase (Fragment)8e-6At3g07010pectate lyase family proteinC.G.S.X.
0.341e-46188Populus trichocarpaPtpAffx.202640.1.S1_atpmrna5277hypothetical protein-2e-77At4g13710pectate lyase family proteinC.G.S.X.
0.047e-756Triticum aestivumTa.11160.1.S1_s_atBQ169530--5e-14At3g07010pectate lyase family proteinC.G.S.X.
0.132e-32139Vitis vinifera1618576_atBQ800615pectate lyase PL1-like-4e-124At4g13710pectate lyase family proteinC.G.S.X.
0.024e+032Zea maysZmAffx.1178.1.A1_atAW927494--3e+0At2g18400ribosomal protein L6 family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00421Link to KaPPA-View 4Polysaccharide lyases



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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