Gene omics information

Query gene ID At4g12960
Gene name gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6579.6At4g12960826908gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFS.X.H.G.
0.9697.3At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.8793.5At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOS.X.H.G.
0.8290.9At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.7989.1At1g24540839069CYP86C1member of CYP86CS.X.H.G.
0.7586.9At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processS.X.H.G.
0.7586.9At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.S.X.H.G.
0.7385.5At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.7184.2At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7083.5At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
315.1100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
213.5100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
192.4100.0GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
188.0100.0GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
182.3100.0GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
173.9100.0GSM133816Yang_1-1_young-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
172.8100.0GSM311286Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
131.399.9GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
106.699.9GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
100.199.9GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.585e-105381At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFC.G.S.X.
0.639e-82303At4g12900826902gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:unknown;C:endomembrane system;MPOFC.G.S.X.
0.574e-56218At4g12870826899gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:unknown;C:endomembrane system;MPOFC.G.S.X.
0.019e-238At3g12810820463PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1)Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).C.G.S.X.
0.019e-238At1g45545841100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.023e-136At3g28600822490ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAVC.G.S.X.
0.033e-136At3g21870821742CYCP2F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBC.G.S.X.
0.013e-136At1g48480841269RKL1Arabidopsis thaliana receptor-like protein kinase (RKL1) geneC.G.S.X.
0.033e-136At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-136Glycine maxGmaAffx.12962.1.S1_atBF009725--2e-16At5g04930ALA1 (aminophospholipid ATPase1)C.G.S.X.
0.033e+032Hordeum vulgareHW03F16u_s_atHW03F16u--1e+0At1g49930-C.G.S.X.
0.043e+034Oryza sativaOsAffx.27154.1.A1_at---0C.G.S.X.
0.035e-136Populus trichocarpaPtpAffx.219526.1.S1_x_atpmrna35469hypothetical protein-1e+0At4g22517-C.G.S.X.
0.034e-136Triticum aestivumTaAffx.78296.1.S1_atCA734700--8e-1At5g45700NLI interacting factor (NIF) family proteinC.G.S.X.
0.032e+032Vitis vinifera1611772_atAY427110.1--9e+0At5g18060auxin-responsive protein, putativeC.G.S.X.
0.029e+030Zea maysZm.13303.1.S1_atCA827309--4e+0At1g27390TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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