CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12910

Gene name scpl20 (serine carboxypeptidase-like 20)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB S.X. H.G.
0.89 94.6 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.78 88.6 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM S.X. H.G.
0.71 84.2 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P S.X. H.G.
0.67 81.6 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. S.X. H.G.
0.64 78.9 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF S.X. H.G.
0.60 75.7 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. S.X. H.G.
0.58 73.8 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.50 65.3 At4g39500 830104 CYP96A11 member of CYP96A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
164.0 99.9 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
158.6 99.9 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
137.8 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
116.8 99.9 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
114.5 99.9 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
105.4 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
96.4 99.9 E-MEXP-1607-raw-cel-1620685818
94.2 99.9 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
86.6 99.9 E-MEXP-285-raw-cel-440783152
84.7 99.9 E-MEXP-1607-raw-cel-1620685810
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 8e-47 188 At3g25420 822126 scpl21 (serine carboxypeptidase-like 21) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.03 1e-5 52 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.02 5e-5 50 At5g42240 834229 scpl42 (serine carboxypeptidase-like 42) F:serine-type carboxypeptidase activity;P:proteolysis;C:cell wall;PMFOB C.G. S.X.
0.02 5e-5 50 At2g12480 815721 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.03 3e-3 44 At5g09640 830823 SCPL19 encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase. C.G. S.X.
0.02 3e-3 44 At5g42230 834228 scpl41 (serine carboxypeptidase-like 41) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.01 1e-2 42 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.01 1e-2 42 At3g12240 820404 SCPL15 (serine carboxypeptidase-like 15) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 52 Glycine max Gma.2534.4.S1_at AW705560 - - 9e-10 At4g02890 UBQ14 C.G. S.X.
0.10 2e-5 50 Hordeum vulgare Contig6897_at Contig6897 carboxypeptidase I precursor - 6e-5 At4g12910 scpl20 (serine carboxypeptidase-like 20) C.G. S.X.
0.03 4e-1 38 Oryza sativa Os12g0257000 AK062220.1 - Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C) 2e-8 At3g25420 scpl21 (serine carboxypeptidase-like 21) C.G. S.X.
0.22 3e-13 77 Populus trichocarpa PtpAffx.3171.1.S1_at CN523333 hypothetical protein - 4e-18 At3g25420 scpl21 (serine carboxypeptidase-like 21) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.56217.1.S1_at CA655705 - - 4e+0 At2g16210 transcriptional factor B3 family protein C.G. S.X.
0.14 6e-5 48 Vitis vinifera 1616418_at BQ797136 hypothetical protein LOC100258524 - 2e-4 At4g12910 scpl20 (serine carboxypeptidase-like 20) C.G. S.X.
0.03 5e-3 42 Zea mays Zm.13101.1.A1_at CA405173 - - 4e-4 At3g25420 scpl21 (serine carboxypeptidase-like 21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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