CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12800

Gene name PSAL (photosystem I subunit L)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. S.X. H.G.
0.98 97.8 At1g30380 839918 PSAK (photosystem I subunit K) Encodes subunit K of photosystem I reaction center. S.X. H.G.
0.97 97.6 At4g28750 828996 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I S.X. H.G.
0.95 97.0 At1g31330 840021 PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. S.X. H.G.
0.95 97.0 At2g06520 815210 PSBX (photosystem II subunit X) Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX. S.X. H.G.
0.95 97.0 At1g08380 837358 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. S.X. H.G.
0.95 97.0 At5g01530 830325 chlorophyll A-B binding protein CP29 (LHCB4) F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POM S.X. H.G.
0.95 97.0 At1g06680 837178 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. S.X. H.G.
0.95 97.0 At1g55670 842016 PSAG (PHOTOSYSTEM I SUBUNIT G) Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin. S.X. H.G.
0.94 96.7 At4g02770 828183 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.8 E-ATMX-34-raw-cel-1563627257
5.5 98.3 E-MEXP-509-raw-cel-829148165
5.4 98.3 E-ATMX-34-raw-cel-1563627248
5.2 98.2 E-MEXP-509-raw-cel-829148525
5.0 98.1 E-MEXP-509-raw-cel-829148456
4.9 98.1 E-MEXP-509-raw-cel-829148808
4.9 98.1 GSM157380 Truman_1-8_Pst-DC3000(hrpA)-4hpi_Rep3_ATH1 GSE6831 Systemic response to avirulent bacterial infection
4.9 98.1 E-MEXP-509-raw-cel-829148201
4.6 97.9 E-ATMX-19-raw-cel-1375547513
4.6 97.9 E-ATMX-34-raw-cel-1563627266
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At2g42380 818839 bZIP transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. C.G. S.X.
0.03 3e-1 36 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-1 36 At1g08280 837348 glycosyl transferase family 29 protein / sialyltransferase family protein F:sialyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, integral to Golgi membrane, membrane;MPOV C.G. S.X.
0.01 1e+0 34 At5g50780 835150 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.02 1e+0 34 At5g17200 831584 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA C.G. S.X.
0.02 1e+0 34 At4g22300 828325 SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis C.G. S.X.
0.03 1e+0 34 At4g05095 825854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 1e+0 34 At2g36210 818193 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-14 79 Glycine max Gma.1316.2.S1_a_at CD417424 - - 4e-14 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.10 2e-10 65 Hordeum vulgare Contig2177_at Contig2177 - - 6e-10 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.03 6e-1 36 Oryza sativa Os11g0227000 AK058632.1 - Hypothetical protein 3e-1 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.31 8e-12 71 Populus trichocarpa PtpAffx.10507.2.S1_s_at AJ767488 hypothetical protein - 8e-12 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.12 4e-10 65 Triticum aestivum Ta.27751.3.S1_at CK211496 - - 4e-10 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.18 1e-31 135 Vitis vinifera 1618370_at CF510718 hypothetical protein LOC100242802 - 8e-31 At4g12800 PSAL (photosystem I subunit L) C.G. S.X.
0.04 2e-3 42 Zea mays Zm.16853.1.A1_at AY103985.1 - - 2e-18 At5g05920 DHS (DEOXYHYPUSINE SYNTHASE) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019684 The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
L GO:0015979 The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00195 Photosynthesis
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage