Gene omics information

Query gene ID At4g12800
Gene name PSAL (photosystem I subunit L)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g12800826892PSAL (photosystem I subunit L)Encodes subunit L of photosystem I reaction center.S.X.H.G.
0.9897.8At1g30380839918PSAK (photosystem I subunit K)Encodes subunit K of photosystem I reaction center.S.X.H.G.
0.9797.6At4g28750828996PSAE-1 (PSA E1 KNOCKOUT)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem IS.X.H.G.
0.9597.0At1g31330840021PSAF (photosystem I subunit F)Encodes subunit F of photosystem I.S.X.H.G.
0.9597.0At2g06520815210PSBX (photosystem II subunit X)Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX.S.X.H.G.
0.9597.0At1g08380837358PSAO (photosystem I subunit O)Encodes subunit O of photosystem I.S.X.H.G.
0.9597.0At5g01530830325chlorophyll A-B binding protein CP29 (LHCB4)F:chlorophyll binding;P:response to blue light, response to red light, response to far red light, photosynthesis;C:in 6 components;POMS.X.H.G.
0.9597.0At1g06680837178PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.S.X.H.G.
0.9597.0At1g55670842016PSAG (PHOTOSYSTEM I SUBUNIT G)Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.S.X.H.G.
0.9496.7At4g02770828183PSAD-1 (photosystem I subunit D-1)Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.998.1GSM157380Truman_1-8_Pst-DC3000(hrpA)-4hpi_Rep3_ATH1GSE6831Systemic response to avirulent bacterial infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-136At2g42380818839bZIP transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.C.G.S.X.
0.033e-136At1g01130839359unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.023e-136At1g08280837348glycosyl transferase family 29 protein / sialyltransferase family proteinF:sialyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, integral to Golgi membrane, membrane;MPOVC.G.S.X.
0.011e+034At5g50780835150ATP bindingF:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.021e+034At5g17200831584glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAC.G.S.X.
0.021e+034At4g22300828325SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1)encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in ArabidopsisC.G.S.X.
0.031e+034At4g05095825854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.031e+034At2g36210818193auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.423e-1479Glycine maxGma.1316.2.S1_a_atCD417424--4e-14At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.102e-1065Hordeum vulgareContig2177_atContig2177--6e-10At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.036e-136Oryza sativaOs11g0227000AK058632.1-Hypothetical protein3e-1At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.318e-1271Populus trichocarpaPtpAffx.10507.2.S1_s_atAJ767488hypothetical protein-8e-12At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.124e-1065Triticum aestivumTa.27751.3.S1_atCK211496--4e-10At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.181e-31135Vitis vinifera1618370_atCF510718hypothetical protein LOC100242802-8e-31At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.042e-342Zea maysZm.16853.1.A1_atAY103985.1--2e-18At5g05920DHS (DEOXYHYPUSINE SYNTHASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0019684The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
LGO:0015979The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00195Link to KEGG PATHWAYPhotosynthesis
01100Link to KEGG PATHWAYMetabolic pathways
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