Gene omics information

Query gene ID At4g12790
Gene name ATP-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g12790826891ATP-binding family proteinF:nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFPAS.X.H.G.
0.2217.5At1g04960839346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOS.X.H.G.
0.2115.8At1g29850839863double-stranded DNA-binding family proteinF:double-stranded DNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;AMOFPBS.X.H.G.
0.2014.4At3g48760824037zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPS.X.H.G.
0.146.8At4g19140827652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.103.4At4g25210828624transcription regulatorF:transcription regulator activity;P:biological_process unknown;C:nucleolus, chloroplast;OMFBPVAS.X.H.G.
0.071.9At1g11890837737SEC22member of SEC22 Gene FamilyS.X.H.G.
0.040.9At3g05840819753ATSK12encodes a SHAGGY-like kinase involved in meristem organization.S.X.H.G.
0.030.6At4g24550828557clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOPS.X.H.G.
0.020.4At5g10070830871RNase L inhibitor protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;OAMFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
61.199.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
36.999.7GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.399.6GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
20.799.6GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
18.999.5GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
17.999.5GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
17.199.5E-MEXP-807-raw-cel-1173273116
16.499.5GSM311288Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
15.799.5E-MEXP-807-raw-cel-1173273252
14.599.4E-MEXP-807-raw-cel-1173273196
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-138At5g54580835546RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAC.G.S.X.
0.021e-138At5g04170830295calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.011e-138At5g06400830528pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAC.G.S.X.
0.024e-136At4g00600825813tetrahydrofolate dehydrogenase/cyclohydrolase, putativeF:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;BOMFPAC.G.S.X.
0.012e+034At5g02880831758UPL4encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.C.G.S.X.
0.012e+034At5g48090834861ELP1 (EDM2-LIKE PROTEIN1)F:unknown;P:unknown;C:cellular_component unknown;MPOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.334e-2099Glycine maxGmaAffx.18860.1.S1_atBE612054--3e-20At4g12790ATP-binding family proteinC.G.S.X.
0.096e-1167Hordeum vulgareContig8639_atContig8639--2e-10At4g12790ATP-binding family proteinC.G.S.X.
0.208e-756Oryza sativaOs03g0337700AK065183.1-Conserved hypothetical ATP binding protein familyprotein7e-7At4g12790ATP-binding family proteinC.G.S.X.
0.313e-27123Populus trichocarpaPtpAffx.69905.1.A1_atCV245342hypothetical protein-4e-27At4g12790ATP-binding family proteinC.G.S.X.
0.145e-1375Triticum aestivumTaAffx.2372.3.S1_atCA735284--2e-13At4g12790ATP-binding family proteinC.G.S.X.
0.063e-548Vitis vinifera1621212_atBQ794170hypothetical protein LOC100260205-7e-5At4g12790ATP-binding family proteinC.G.S.X.
0.361e-23109Zea maysZm.12690.1.S1_atCA831966hypothetical protein LOC100191357-5e-23At4g12790ATP-binding family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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