CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12590

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At4g12590 826872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP S.X. H.G.
0.74 86.1 At5g09900 830850 EMB2107 (EMBRYO DEFECTIVE 2107) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. S.X. H.G.
0.71 84.2 At3g27430 822364 PBB1 Encodes 20S proteasome beta subunit PBB1 (PBB1). S.X. H.G.
0.70 83.5 At4g24820 828585 26S proteasome regulatory subunit, putative (RPN7) F:molecular_function unknown;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane;MFPO S.X. H.G.
0.67 81.6 At3g60820 825253 PBF1 Encodes 20S proteasome beta subunit PBF1 (PBF1). S.X. H.G.
0.59 74.7 At5g05780 830463 RPN8A (RP NON-ATPASE SUBUNIT 8A) Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. S.X. H.G.
0.53 68.6 At1g65270 842834 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPO S.X. H.G.
0.53 68.6 At1g64520 842760 RPN12a (Regulatory Particle non-ATPase 12a) F:peptidase activity;P:in 14 processes;C:proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope;MFOP S.X. H.G.
0.50 65.3 At1g21720 838776 PBC1 (PROTEASOME BETA SUBUNIT C1) 20S proteasome beta subunit PBC1 truncated protein (PBC1) S.X. H.G.
0.31 33.8 At5g45620 834602 26S proteasome regulatory subunit, putative (RPN9) F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, lid subcomplex;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.5 98.8 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.8 98.7 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.5 98.3 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
5.3 98.3 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
5.2 98.2 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
5.2 98.2 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
5.1 98.2 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.0 98.1 GSM133122 S0_12H_B GSE5688 AtGenExpress: Response to sulfate limitation
5.0 98.1 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
4.9 98.1 GSM157307 Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-2 38 At2g41160 818715 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPO C.G. S.X.
0.02 4e-1 36 At1g79480 844286 - F:unknown;P:unknown;C:endomembrane system;MOFBPVA C.G. S.X.
0.01 4e-1 36 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 4e-1 36 At1g29740 839852 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 1e+0 34 At5g58140 835926 PHOT2 (PHOTOTROPIN 2) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 3e-76 286 Glycine max Gma.8031.1.S1_at BE823105 - - 4e-76 At4g12590 unknown protein C.G. S.X.
0.20 3e-34 145 Hordeum vulgare Contig5182_at Contig5182 - - 9e-34 At4g12590 unknown protein C.G. S.X.
0.34 7e-32 139 Oryza sativa Os09g0497400 AK068677.1 - Eukaryotic protein of unknown function DUF850family protein 5e-32 At4g12590 unknown protein C.G. S.X.
0.47 2e-96 353 Populus trichocarpa PtpAffx.6864.1.S1_at CN550052 hypothetical protein - 2e-96 At4g12590 unknown protein C.G. S.X.
0.24 9e-36 151 Triticum aestivum Ta.6467.1.S1_a_at CK194906 - - 1e-35 At4g12590 unknown protein C.G. S.X.
0.45 4e-69 260 Vitis vinifera 1613866_s_at CF510932 hypothetical protein LOC100245100 - 2e-68 At4g12590 unknown protein C.G. S.X.
0.33 6e-38 157 Zea mays Zm.7045.1.A1_at AY108667.1 protein pob - 2e-37 At4g12590 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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