Gene omics information

Query gene ID At4g12580
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At4g12580826871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBS.X.H.G.
0.9998.1At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceS.X.H.G.
0.9998.1At1g05770837085jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9998.1At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.9998.1At1g73370843672SUS6 (SUCROSE SYNTHASE 6)Encodes a protein with sucrose synthase activity (SUS6).S.X.H.G.
0.9998.1At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMS.X.H.G.
0.9998.1At3g03200821226anac045 (Arabidopsis NAC domain containing protein 45)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMBS.X.H.G.
0.9998.1At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POS.X.H.G.
0.9998.1At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFS.X.H.G.
0.9998.1At5g02140831881thaumatin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1852.3100.0GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
1034.8100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
841.2100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
664.5100.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
316.1100.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
54.099.8GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
41.099.8GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
39.899.8GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
31.599.7GSM184933Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
22.999.6GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-136At5g17930831661binding / protein bindingF:protein binding, binding;P:RNA metabolic process;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.061e-136At5g52740835351heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PC.G.S.X.
0.031e-136At1g46912841119F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e-136At1g31280840016AGO2 (argonaute 2)An Argonaute geneC.G.S.X.
0.016e-134At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.C.G.S.X.
0.046e-134At4g018833770374-F:unknown;P:unknown;C:chloroplast;BOPC.G.S.X.
0.016e-134At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)C.G.S.X.
0.026e-134At3g54630824628-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.036e-134At3g48920824053AtMYB45 (myb domain protein 45)Member of the R2R3 factor gene family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-136Glycine maxGmaAffx.75948.1.S1_atBF424136--6e-15At1g08470strictosidine synthase family proteinC.G.S.X.
0.043e-134Hordeum vulgareHVSMEg0003B10r2_atHVSMEg0003B10r2--1e+0At4g12580unknown proteinC.G.S.X.
0.043e-136Oryza sativaOs.40073.1.S1_at---0C.G.S.X.
0.072e-136Populus trichocarpaPtpAffx.57369.1.A1_atCV228393--2e-1At4g12580unknown proteinC.G.S.X.
0.056e-134Triticum aestivumTaAffx.78185.1.S1_atCA736379--7e-1At4g12580unknown proteinC.G.S.X.
0.053e+030Vitis vinifera1621664_x_atAY427084.1--2e-1At4g10780disease resistance protein (CC-NBS-LRR class), putativeC.G.S.X.
0.034e+030Zea maysZm.9629.1.A1_atBM334190--1e-3At5g52330meprin and TRAF homology domain-containing protein / MATH domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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