CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12580

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB S.X. H.G.
0.99 98.1 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance S.X. H.G.
0.99 98.1 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.99 98.1 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.99 98.1 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). S.X. H.G.
0.99 98.1 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM S.X. H.G.
0.99 98.1 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB S.X. H.G.
0.99 98.1 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO S.X. H.G.
0.99 98.1 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF S.X. H.G.
0.99 98.1 At5g02140 831881 thaumatin-like protein, putative F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1852.3 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
1034.8 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
841.2 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
664.5 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
316.1 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
54.0 99.8 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
41.0 99.8 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
39.8 99.8 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
31.5 99.7 GSM184933 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
22.9 99.6 GSM131303 AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 36 At5g17930 831661 binding / protein binding F:protein binding, binding;P:RNA metabolic process;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.06 1e-1 36 At5g52740 835351 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.03 1e-1 36 At1g46912 841119 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e-1 36 At1g31280 840016 AGO2 (argonaute 2) An Argonaute gene C.G. S.X.
0.01 6e-1 34 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. C.G. S.X.
0.04 6e-1 34 At4g01883 3770374 - F:unknown;P:unknown;C:chloroplast;BOP C.G. S.X.
0.01 6e-1 34 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) C.G. S.X.
0.02 6e-1 34 At3g54630 824628 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.03 6e-1 34 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Glycine max GmaAffx.75948.1.S1_at BF424136 - - 6e-15 At1g08470 strictosidine synthase family protein C.G. S.X.
0.04 3e-1 34 Hordeum vulgare HVSMEg0003B10r2_at HVSMEg0003B10r2 - - 1e+0 At4g12580 unknown protein C.G. S.X.
0.04 3e-1 36 Oryza sativa Os.40073.1.S1_at - - - 0 C.G. S.X.
0.07 2e-1 36 Populus trichocarpa PtpAffx.57369.1.A1_at CV228393 - - 2e-1 At4g12580 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum TaAffx.78185.1.S1_at CA736379 - - 7e-1 At4g12580 unknown protein C.G. S.X.
0.05 3e+0 30 Vitis vinifera 1621664_x_at AY427084.1 - - 2e-1 At4g10780 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.03 4e+0 30 Zea mays Zm.9629.1.A1_at BM334190 - - 1e-3 At5g52330 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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