Gene omics information

Query gene ID At4g12550
Gene name AIR1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.S.X.H.G.
0.7184.2At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVS.X.H.G.
0.7184.2At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
0.6478.9At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6176.7At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.S.X.H.G.
0.5368.6At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.S.X.H.G.
0.4862.5At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.S.X.H.G.
0.4761.2At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
57.899.8GSM245917wild type dark replicate 2GSE9728COP9 signalosome (csn) mutant analysis
46.599.8GSM265462Arabidopsis, whole roots, standard conditions, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
46.399.8E-MEXP-722-raw-cel-1062243239
46.099.8GSM231197wild-type at T0.5, biological rep2GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
40.499.8GSM231198wild-type at T0.5, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
37.699.7GSM231195wild-type at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
37.299.7E-MEXP-722-raw-cel-1062243183
36.799.7GSM231201chl1 at T0, biological rep3GSE9148Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
35.999.7E-MEXP-722-raw-cel-1062243108
35.799.7GSM265464Arabidopsis, whole roots, -Fe, 3 hour, rep 2GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.979e-139492At4g12545826867protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:molecular_function unknown;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.087e-754At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedC.G.S.X.
0.083e-652At4g12500826862protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:unknown;POBMVFAC.G.S.X.
0.144e-548At4g00165828076protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:N-terminal protein myristoylation, lipid transport;C:endomembrane system;PC.G.S.X.
0.072e-446At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAC.G.S.X.
0.162e-446At1g62510842548protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFAC.G.S.X.
0.073e-342At5g46890834734protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.073e-342At5g46900834735protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-136Glycine maxGma.2516.2.S1_s_atCF922276--1e-7At2g45180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.071e+032Hordeum vulgareHVSMEm0006M14r2_atHVSMEm0006M14r2--1e+0At4g12550AIR1C.G.S.X.
0.043e-136Oryza sativaOs03g05766009631.m03641-Acyl-CoA-binding protein (ACBP)6e-11At1g31812ACBP6 (acyl-CoA-binding protein 6)C.G.S.X.
0.044e+032Populus trichocarpaPtpAffx.220785.1.S1_atpmrna37217hypothetical protein-4e+0At4g12550AIR1C.G.S.X.
0.052e-136Triticum aestivumTaAffx.30545.1.S1_atCA624245--3e-1At4g12545protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.103e-959Vitis vinifera1612791_atCF215262hypothetical protein LOC100257513-2e-8At2g45180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.044e+030Zea maysZmAffx.391.1.A1_atAI676819--1e-2At2g25685SCRL17 (SCR-Like 17)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010102The process by which the anatomical structures of lateral root are generated and organized. Morphogenesis pertains to the creation of form. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
CGO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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