CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12550

Gene name AIR1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. S.X. H.G.
0.71 84.2 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.71 84.2 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.61 76.7 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.53 68.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.48 62.5 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.47 61.2 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.8 99.8 GSM245917 wild type dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
46.5 99.8 GSM265462 Arabidopsis, whole roots, standard conditions, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
46.3 99.8 E-MEXP-722-raw-cel-1062243239
46.0 99.8 GSM231197 wild-type at T0.5, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
40.4 99.8 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
37.6 99.7 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
37.2 99.7 E-MEXP-722-raw-cel-1062243183
36.7 99.7 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
35.9 99.7 E-MEXP-722-raw-cel-1062243108
35.7 99.7 GSM265464 Arabidopsis, whole roots, -Fe, 3 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 9e-139 492 At4g12545 826867 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:molecular_function unknown;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.08 7e-7 54 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced C.G. S.X.
0.08 3e-6 52 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.14 4e-5 48 At4g00165 828076 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:N-terminal protein myristoylation, lipid transport;C:endomembrane system;P C.G. S.X.
0.07 2e-4 46 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA C.G. S.X.
0.16 2e-4 46 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA C.G. S.X.
0.07 3e-3 42 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.07 3e-3 42 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-1 36 Glycine max Gma.2516.2.S1_s_at CF922276 - - 1e-7 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.07 1e+0 32 Hordeum vulgare HVSMEm0006M14r2_at HVSMEm0006M14r2 - - 1e+0 At4g12550 AIR1 C.G. S.X.
0.04 3e-1 36 Oryza sativa Os03g0576600 9631.m03641 - Acyl-CoA-binding protein (ACBP) 6e-11 At1g31812 ACBP6 (acyl-CoA-binding protein 6) C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.220785.1.S1_at pmrna37217 hypothetical protein - 4e+0 At4g12550 AIR1 C.G. S.X.
0.05 2e-1 36 Triticum aestivum TaAffx.30545.1.S1_at CA624245 - - 3e-1 At4g12545 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.10 3e-9 59 Vitis vinifera 1612791_at CF215262 hypothetical protein LOC100257513 - 2e-8 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 4e+0 30 Zea mays ZmAffx.391.1.A1_at AI676819 - - 1e-2 At2g25685 SCRL17 (SCR-Like 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010102 The process by which the anatomical structures of lateral root are generated and organized. Morphogenesis pertains to the creation of form. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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