CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12510

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.73 85.5 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.73 85.5 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.67 81.6 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). S.X. H.G.
0.63 78.1 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.40 50.8 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.1 99.8 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
51.3 99.8 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
49.6 99.8 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
48.0 99.8 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
45.5 99.8 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
39.5 99.8 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
38.7 99.8 GSM266672 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
35.9 99.7 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
32.1 99.7 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
28.9 99.7 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
1.00 0 716 At4g12520 826864 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.20 8e-7 54 At1g12090 837761 ELP (EXTENSIN-LIKE PROTEIN) extensin-like protein (ELP) C.G. S.X.
0.18 3e-6 52 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.18 3e-6 52 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.19 3e-6 52 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.29 3e-6 52 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA C.G. S.X.
0.21 8e-4 44 At2g45180 819126 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast thylakoid membrane;P C.G. S.X.
0.01 7e-1 34 At5g04480 830327 - F:molecular_function unknown;P:biosynthetic process;C:Golgi apparatus;BOPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 50 Glycine max Gma.7993.1.S1_at BI967267 - - 1e-7 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare EBem07_SQ004_I01_at EBem07_SQ004_I01 - - 4e+0 At2g31335 unknown protein C.G. S.X.
0.04 4e-1 36 Oryza sativa Os02g0662100 AK058218.1 - ZmGR1a protein 4e-1 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.17 2e-2 40 Populus trichocarpa PtpAffx.249.118.S1_s_at CV275916 hypothetical protein - 2e-2 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.06 3e-3 42 Triticum aestivum TaAffx.58540.1.S1_at CA618733 - - 5e-3 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.09 9e-1 32 Vitis vinifera 1612791_at CF215262 hypothetical protein LOC100257513 - 2e-8 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.10851.1.A1_at AW076437 - - 5e+0 At4g12510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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