CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12490

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA S.X. H.G.
0.67 81.6 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.53 68.6 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.50 65.3 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.50 65.3 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.48 62.5 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.38 46.7 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
0.23 19.3 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA S.X. H.G.
0.20 14.4 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
0.18 11.4 At1g76930 844028 ATEXT4 (EXTENSIN 4) Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
109.0 99.9 GSM245913 csn5 (csn5a-2 csn5b) mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
102.1 99.9 GSM245914 csn5 (csn5a-2 csn5b) mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
101.6 99.9 GSM245915 csn5 (csn5a-2 csn5b) mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
90.6 99.9 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
85.6 99.9 GSM245910 csn3-1 mutant light replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
82.4 99.9 GSM245911 csn3-1 mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
80.1 99.9 GSM245912 csn3-1 mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
72.5 99.9 GSM128663 Underwood_1-16_Cor-hrpS-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
68.7 99.9 GSM245926 csn5 (csn5a-2 csn5b) mutant dark replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
66.4 99.8 GSM142847 MG001_ATH1_A28-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.92 3e-164 577 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.76 1e-101 369 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced C.G. S.X.
0.68 1e-83 309 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA C.G. S.X.
0.13 3e-10 65 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.13 5e-6 52 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.13 5e-6 52 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.06 3e-1 36 At2g45180 819126 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast thylakoid membrane;P C.G. S.X.
0.02 3e-1 36 At2g22140 816748 ATEME1B (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1B) Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-7 57 Glycine max Gma.7993.1.S1_at BI967267 - - 1e-7 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig4433_s_at Contig4433 - - 2e-5 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.07 5e-1 36 Oryza sativa Os10g0178000 9638.m00865 - - 2e-1 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.58813.1.A1_at CK090185 heavy metal ATPase - 5e+0 Atcg00470 - C.G. S.X.
0.11 1e-3 44 Triticum aestivum Ta.9275.2.S1_x_at CA630550 - - 1e-3 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.08 3e-4 44 Vitis vinifera 1612791_at CF215262 hypothetical protein LOC100257513 - 2e-8 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.199.1.A1_at AI668491 - - 7e-1 At1g14687 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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