Gene omics information

Query gene ID At4g12480
Gene name pEARLI 1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedS.X.H.G.
0.4457.2At4g12500826862protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:unknown;POBMVFAS.X.H.G.
0.4050.8At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMS.X.H.G.
0.3338.1At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAS.X.H.G.
0.2726.2At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAS.X.H.G.
0.1811.4At5g64120836533peroxidase, putativeencodes a cell wall bound peroxidase that is induced by hypo-osmolarityS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
47.499.8E-MEXP-807-raw-cel-1173272832
44.199.8GSM258794pvip1 pvip2 seedling biological replicate 3GSE10248Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
41.399.8GSM258793pvip1 pvip2 seedling biological replicate 2GSE10248Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
32.299.7GSM245915csn5 (csn5a-2 csn5b) mutant light replicate 3GSE9728COP9 signalosome (csn) mutant analysis
31.999.7GSM245921csn3-1_mutant_dark replicate 1GSE9728COP9 signalosome (csn) mutant analysis
30.999.7E-MEXP-807-raw-cel-1173273005
30.699.7GSM258792pvip1 pvip2 seedling biological replicate 1GSE10248Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
27.099.7GSM161533Control for GR-REV dex treatment: mock induced WT Ler seedlings GSE7003Experiment to identify downstream targets of Arabidopsis REVOLUTA (HDZIPIII) transcription factor.
26.899.7GSM131111AtGen_B-39_3-4-4_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.399.7GSM245914csn5 (csn5a-2 csn5b) mutant light replicate 2GSE9728COP9 signalosome (csn) mutant analysis
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.892e-116418At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAC.G.S.X.
0.772e-116418At4g12500826862protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:unknown;POBMVFAC.G.S.X.
0.761e-101369At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAC.G.S.X.
0.207e-1167At1g62510842548protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFAC.G.S.X.
0.131e-963At4g00165828076protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:N-terminal protein myristoylation, lipid transport;C:endomembrane system;PC.G.S.X.
0.104e-961At5g46890834734protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.104e-961At5g46900834735protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.147e-857At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e+034Glycine maxGma.7993.1.S1_atBI967267--1e-7At4g12490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.042e+032Hordeum vulgareContig22353_x_atContig22353--1e-1At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)C.G.S.X.
0.048e+032Oryza sativaOsAffx.31332.1.S1_at---0C.G.S.X.
0.091e+034Populus trichocarpaPtpAffx.249.2.S1_atD83226.1hypothetical protein-5e-16At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.034e+032Triticum aestivumTa.8105.1.S1_atCD939149--1e+0At3g23165LCR42 (Low-molecular-weight cysteine-rich 42)C.G.S.X.
0.041e+032Vitis vinifera1611581_atCF212544--2e-5At5g36890BGLU42 (BETA GLUCOSIDASE 42)C.G.S.X.
0.037e+030Zea maysZmAffx.754.1.A1_atAI745921--2e-1At1g33960AIG1 (AVRRPT2-INDUCED GENE 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
CGO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage