CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12480

Gene name pEARLI 1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced S.X. H.G.
0.44 57.2 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.40 50.8 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.33 38.1 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA S.X. H.G.
0.27 26.2 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.18 11.4 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.4 99.8 E-MEXP-807-raw-cel-1173272832
44.1 99.8 GSM258794 pvip1 pvip2 seedling biological replicate 3 GSE10248 Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
41.3 99.8 GSM258793 pvip1 pvip2 seedling biological replicate 2 GSE10248 Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
32.2 99.7 GSM245915 csn5 (csn5a-2 csn5b) mutant light replicate 3 GSE9728 COP9 signalosome (csn) mutant analysis
31.9 99.7 GSM245921 csn3-1_mutant_dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
30.9 99.7 E-MEXP-807-raw-cel-1173273005
30.6 99.7 GSM258792 pvip1 pvip2 seedling biological replicate 1 GSE10248 Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
27.0 99.7 GSM161533 Control for GR-REV dex treatment: mock induced WT Ler seedlings GSE7003 Experiment to identify downstream targets of Arabidopsis REVOLUTA (HDZIPIII) transcription factor.
26.8 99.7 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.3 99.7 GSM245914 csn5 (csn5a-2 csn5b) mutant light replicate 2 GSE9728 COP9 signalosome (csn) mutant analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 2e-116 418 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA C.G. S.X.
0.77 2e-116 418 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.76 1e-101 369 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA C.G. S.X.
0.20 7e-11 67 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA C.G. S.X.
0.13 1e-9 63 At4g00165 828076 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:N-terminal protein myristoylation, lipid transport;C:endomembrane system;P C.G. S.X.
0.10 4e-9 61 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.10 4e-9 61 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.14 7e-8 57 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e+0 34 Glycine max Gma.7993.1.S1_at BI967267 - - 1e-7 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig22353_x_at Contig22353 - - 1e-1 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.04 8e+0 32 Oryza sativa OsAffx.31332.1.S1_at - - - 0 C.G. S.X.
0.09 1e+0 34 Populus trichocarpa PtpAffx.249.2.S1_at D83226.1 hypothetical protein - 5e-16 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum Ta.8105.1.S1_at CD939149 - - 1e+0 At3g23165 LCR42 (Low-molecular-weight cysteine-rich 42) C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1611581_at CF212544 - - 2e-5 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.754.1.A1_at AI745921 - - 2e-1 At1g33960 AIG1 (AVRRPT2-INDUCED GENE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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