CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g12470

Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA S.X. H.G.
0.67 81.6 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced S.X. H.G.
0.67 81.6 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA S.X. H.G.
0.23 19.3 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.20 14.4 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.3 99.8 E-MEXP-807-raw-cel-1173272894
44.0 99.8 E-MEXP-807-raw-cel-1173273005
43.5 99.8 E-MEXP-807-raw-cel-1173272832
38.1 99.8 E-MEXP-807-raw-cel-1173273032
37.1 99.7 E-MEXP-1112-raw-cel-1590665481
33.9 99.7 E-MEXP-807-raw-cel-1173272864
32.4 99.7 E-MEXP-1112-raw-cel-1590665637
30.2 99.7 E-MEXP-1112-raw-cel-1590665533
28.5 99.7 E-MEXP-1112-raw-cel-1590665897
28.1 99.7 E-MEXP-807-raw-cel-1173272977
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 2e-116 418 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced C.G. S.X.
0.69 4e-89 327 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA C.G. S.X.
0.71 1e-83 309 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA C.G. S.X.
0.11 4e-9 61 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.11 6e-8 57 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.11 6e-8 57 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.12 1e-6 54 At4g00165 828076 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:N-terminal protein myristoylation, lipid transport;C:endomembrane system;P C.G. S.X.
0.07 2e-4 46 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Glycine max Gma.4050.1.S1_at AW317179 - - 4e-1 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig16676_at Contig16676 - - 5e-1 At4g12470 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.21970.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.30743.5.A1_at CV244509 hypothetical protein - 2e-2 At3g61840 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.38637.2.S1_at CA654691 - - 4e+0 At4g12470 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1616733_s_at CB981317 hypothetical protein LOC100255975 - 1e-3 At5g56610 dual specificity protein phosphatase family protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.199.1.A1_at AI668491 - - 7e-1 At1g14687 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009627 The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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