CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11870

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At4g11870 826794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMAP S.X. H.G.
0.67 81.6 At3g52830 824449 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.55 70.6 At1g50850 3767430 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.50 65.3 At1g52010 3767438 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.44 57.2 At2g26120 817152 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3279.4 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
223.1 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
183.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
136.5 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
117.0 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
101.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
95.4 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
78.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
74.0 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 4e-7 54 At2g11005 815567 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.21 2e-6 52 At3g44950 823630 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVA C.G. S.X.
0.07 7e-3 40 At1g56530 842106 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 4e-1 34 At3g43583 2745931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFVA C.G. S.X.
0.02 2e+0 32 At5g09760 830836 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, chloroplast, plant-type cell wall;PBFOM C.G. S.X.
0.04 2e+0 32 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA C.G. S.X.
0.01 2e+0 32 At5g03140 831590 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 2e+0 32 At4g16610 827362 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMFOB C.G. S.X.
0.05 2e+0 32 At4g19270 827667 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-1 36 Glycine max Gma.6488.1.S1_at BQ612355 - - 2e-1 At4g11870 unknown protein C.G. S.X.
0.05 2e-1 34 Hordeum vulgare Contig12416_at Contig12416 - - 8e-1 At4g11870 unknown protein C.G. S.X.
0.04 5e-2 38 Oryza sativa Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein C.G. S.X.
0.06 6e-1 34 Populus trichocarpa PtpAffx.212131.1.S1_at pmrna23791 hypothetical protein - 7e-1 At4g11870 unknown protein C.G. S.X.
0.06 1e-1 36 Triticum aestivum TaAffx.105981.1.S1_x_at CA727065 - - 3e-1 At4g11870 unknown protein C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1607594_at CB980904 - - 4e-6 At5g13760 unknown protein C.G. S.X.
0.04 4e-2 36 Zea mays Zm.3500.1.S1_at AI977932 hypothetical protein LOC100274526 - 3e-1 At4g11870 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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