Gene omics information

Query gene ID At4g11860
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At4g11860826793-F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPBS.X.H.G.
0.5773.8At1g05090839327dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVS.X.H.G.
0.3846.7At2g43210818922UBX domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVS.X.H.G.
0.3338.1At1g75850843918VPS35B (VPS35 HOMOLOG B)F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPBS.X.H.G.
0.3235.7At1g32130840105-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.999.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.799.6GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.699.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.199.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
20.499.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.699.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
16.499.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.999.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.599.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.099.4GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.097e-39163At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVC.G.S.X.
0.072e-242At4g22960828395unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.013e-138At5g26340832703MSS1Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.C.G.S.X.
0.011e+036At5g45560834592pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinF:lipid binding;P:unknown;C:mitochondrion;PMOC.G.S.X.
0.011e+036At5g12440831119nucleic acid binding / nucleotide binding / zinc ion bindingF:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMOC.G.S.X.
0.011e+036At5g45990834639crooked neck protein, putative / cell cycle protein, putativeF:binding;P:RNA processing;C:intracellular;MFOPBAC.G.S.X.
0.011e+036At4g08290826383nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMFC.G.S.X.
0.011e+036At3g14490820672terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.083e-1791Glycine maxGma.6923.1.S1_atBE659261--7e-18At4g11860-C.G.S.X.
0.012e+034Hordeum vulgareContig20548_atContig20548--3e-8At5g28490LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)C.G.S.X.
0.041e-759Oryza sativaOs06g0712400AK067573.1-Protein of unknown function DUF544 family protein9e-8At4g11860-C.G.S.X.
0.251e-40169Populus trichocarpaPtpAffx.203206.1.S1_x_atpmrna6357hypothetical protein-9e-41At4g11860-C.G.S.X.
0.013e-138Triticum aestivumTa.5002.2.S1_atCA712853--1e+0At3g15353MT3 (METALLOTHIONEIN 3)C.G.S.X.
0.073e-1375Vitis vinifera1619166_atCF515677hypothetical protein LOC100263264-3e-13At4g11860-C.G.S.X.
0.017e+032Zea maysZm.820.3.S1_atAI691700Hypothetical protein LOC100216625-8e-1At5g45130RHA1 (RAB HOMOLOG 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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