CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At4g11860

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At4g11860 826793 - F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MFOPB S.X. H.G.
0.57 73.8 At1g05090 839327 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV S.X. H.G.
0.38 46.7 At2g43210 818922 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV S.X. H.G.
0.33 38.1 At1g75850 843918 VPS35B (VPS35 HOMOLOG B) F:unknown;P:intracellular protein transport, retrograde transport, endosome to Golgi;C:cellular_component unknown;MFOPB S.X. H.G.
0.32 35.7 At1g32130 840105 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.9 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.7 99.6 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.6 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.1 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.4 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.6 99.6 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
16.4 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.9 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.5 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.0 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 7e-39 163 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV C.G. S.X.
0.07 2e-2 42 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 3e-1 38 At5g26340 832703 MSS1 Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. C.G. S.X.
0.01 1e+0 36 At5g45560 834592 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:lipid binding;P:unknown;C:mitochondrion;PMO C.G. S.X.
0.01 1e+0 36 At5g12440 831119 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.01 1e+0 36 At5g45990 834639 crooked neck protein, putative / cell cycle protein, putative F:binding;P:RNA processing;C:intracellular;MFOPBA C.G. S.X.
0.01 1e+0 36 At4g08290 826383 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF C.G. S.X.
0.01 1e+0 36 At3g14490 820672 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-17 91 Glycine max Gma.6923.1.S1_at BE659261 - - 7e-18 At4g11860 - C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig20548_at Contig20548 - - 3e-8 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) C.G. S.X.
0.04 1e-7 59 Oryza sativa Os06g0712400 AK067573.1 - Protein of unknown function DUF544 family protein 9e-8 At4g11860 - C.G. S.X.
0.25 1e-40 169 Populus trichocarpa PtpAffx.203206.1.S1_x_at pmrna6357 hypothetical protein - 9e-41 At4g11860 - C.G. S.X.
0.01 3e-1 38 Triticum aestivum Ta.5002.2.S1_at CA712853 - - 1e+0 At3g15353 MT3 (METALLOTHIONEIN 3) C.G. S.X.
0.07 3e-13 75 Vitis vinifera 1619166_at CF515677 hypothetical protein LOC100263264 - 3e-13 At4g11860 - C.G. S.X.
0.01 7e+0 32 Zea mays Zm.820.3.S1_at AI691700 Hypothetical protein LOC100216625 - 8e-1 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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